RNA id: LOC118944204


Basic Information

Item Value
RNA id LOC118944204
length 214
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC118944204
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97759785 ~ 97761071 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCGTCTACAAGCATTTTTCTTGGAACAAGGTTGTCGAGTTTTTAGAACAGAGTCCATAAGACACAGAGCTGTTGCAAAACAGTAAATGGATTTTCAAAATGTAGACCGTATATTAAAGGGATTTTTGGAATAGGGAGATGGAataggggcttgctccgtccactccacgcatcgacctggtattgcagtacctccaggAACGGTGCACCCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237435 lncRNA upstream 4738 97716800 ~ 97755407 (+) True G209668
TU237432 lncRNA upstream 6877 97715108 ~ 97753268 (+) True G209667
TU237379 lncRNA upstream 14537 97709384 ~ 97745608 (+) False G209629
TU237378 lncRNA upstream 14537 97738851 ~ 97745608 (+) False G209629
TU237380 lncRNA upstream 14537 97744348 ~ 97745608 (+) True G209629
TU237449 lncRNA downstream 27033 97787391 ~ 97787596 (+) True G209680
TU237456 lncRNA downstream 34862 97795220 ~ 97796264 (+) True G209687
TU237461 lncRNA downstream 41300 97801658 ~ 97801889 (+) True G209692
TU237462 lncRNA downstream 41853 97802211 ~ 97802612 (+) True G209693
TU237463 lncRNA downstream 42517 97802875 ~ 97803084 (+) True G209694
LOC118944218 mRNA upstream 5873 97754174 ~ 97754272 (+) True LOC118944218
XM_036960224.1 mRNA upstream 13329 97732204 ~ 97746816 (+) False LOC110512528
XM_036960337.1 mRNA downstream 6210 97766568 ~ 97779525 (+) True si:dkey-29p10.4
XM_036960342.1 mRNA downstream 144510 97904868 ~ 98015151 (+) False LOC110500615
XM_036960346.1 mRNA downstream 144510 97904868 ~ 98015152 (+) True LOC110500615
XR_005039180.1 mRNA downstream 256283 98016641 ~ 98017881 (+) False LOC118943873
XM_036960349.1 mRNA downstream 265977 98026335 ~ 98086147 (+) True LOC118943872
TU237386 other upstream 60369 97698111 ~ 97699776 (+) True LOC110500822
TU237326 other upstream 141056 97618617 ~ 97619089 (+) False G209591
TU237298 other upstream 273373 97486476 ~ 97486772 (+) True G209586
TU236415 other upstream 1146686 96612429 ~ 96613459 (+) True G208836
TU235944 other upstream 1531682 96227793 ~ 96228463 (+) True G208404
TU237549 other downstream 196886 97957244 ~ 97957836 (+) False G209759
TU238408 other downstream 936810 98697168 ~ 98700392 (+) True G210408
TU238278 other downstream 1137166 98897524 ~ 98899538 (+) True LOC110510476
TU238516 other downstream 1142430 98902788 ~ 98926406 (+) True G210484
TU238947 other downstream 1477020 99237378 ~ 99238258 (+) True G210823