RNA id: XM_021578235.2


Basic Information

Item Value
RNA id XM_021578235.2
length 2115
RNA type mRNA
GC content 0.52
exon number 4
gene id LOC110500713
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98313023 ~ 98352485 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTCCATCTCTGTTGTCTGAGTAATAACAGAGCTGGTTTGGCGCTGACTTTCACTAGTGTCGTGTGCAGAGGACTTTAGTGGGACCAGCAGTGGCATCGTCTGTAAAGCAACGGCATTTTGGTTCCTTACCCCGGTAAACCTTCAGGGGGATTTCTTTGCATTCATTTGTTCAGTCTTCTGCAAGTCTCTGGAAAACATCTACTTCGTTTTATAACCAACCCCAGATGcggcagtgtgtgtgagagtgtgtgtgagagtgtgtgttcgCCAGTGCTTGAGAGAAAGGGTTCTTGCTGCAAGGGGAAAAGGAGAACGAAGAAACAAACGGTTTGGATTTTTTCAATTCAATTTTTTGCGGGGTGATTTTTTTTAGGAATGAACGCAGATACGTGCGTTTCATACTGTGATATGACATCCATAGATTCATATTATAACACGCCTTCGCCACACGGTAGGGATCAACAACCATCGGATCCCTTCAGAATATTCCAACCGAGTGAAACCAAATACAGCCCAACGTTCCTACCCAAAGGACAACAGGGTTACGAGGAGAAGTCTCGGAGTCCTTTCCAACAGGAGTGCCAGTCACTGGATGACGGCACAGAGGAGGGCAACAACTTCAACAAATACCACCTCTTCATGCAACGACCGACCTGCAAAACACCCCCGGAAGGCGAAAAACTCCACCAGGAAAGCGGAGGACACAACGACGCGCTCATCCCCTGCTATGCCAAAGACAACGGCGGTCTAACCGAATCTGAGCTGACCCCAAACACTGACTCTCCCGGGATGGAAGGTTCCTACCTGAACCTGAAGGAAccggggttaggggtcagaggtcagggctcCGACCACCTCTCCAGTCTCGTGGACAAAGGGAGCGAGGCAGCAGACAGCAACAAGGGAAAGAAGAGACGGAATCGCACCACGTTTACCTCCTACCAGCTGGAGGAACTAGAGAAGGTGTTCCAGAAGACACACTATCCAGACGTCTACGTTAGAGAACAACTGGCGTTGAGGACCGATCTGACAGAGGCTAGAGTACAGgTGTGGTTCCAGAACCGGCGTGCTaagtggaggaagagggagaggtttggTCAGATGCAGCAGGTCAGGACTCACTTCTCTACTGCCTACGAGCTACCCCTCCTCACCAGGCCAGAGAACTACACACAGATCCAGAACCCATCGTGGCTAGGTGTTGGCAGCGGTGTCTCTCCTgtacctggctgtgtggtgccctGTGACGGGTCAGTCACCTCCTGCATGCCTCCCCACCCTCATGGAGGGGTCTCCGACTACCTAGGCGTGCCCAGCCCGGGCGTAATGGGGCATGAGGGTCACATGGGACAGACACACATGGGAAGTCTCTTTGGGGCTGGAGGAATGGGCGGAGTGGGTGGCGGTCTCAGCGGTTACGACCTGACCAGTGTCGACCCAGACAGAAAGTCTTCTAGTATCGCAGCGCTGCGCATGAAAGCTAAGGAACACAGCGCTGCCATCTCCTGGAACACATGATGCTATGGGAACTTTCCTGGGTCTGGCCCCACCCTGGTCAGACACGCCCTAACCCTGCCTCCTCATCCATACTCTCCTGAACCTGGACAAGGCCATGCCCAGTActgggaaggaggaagaggaggagcaggacgaGGAGGAAGGTCAGGATGGGACTACGACTACGCCACCTGATAGCACTAATAATACCAAAGCAGGTGAAATGAATGAACTACAACCCGAGACGACAGGAGAGACCATCACAGGAAACGATTCAGCAGCTTTAGAATGATACCAACAATGACGTCACCATGGCAATCAGCAGGAGACGCTGAGAAAAGAAGACGCTAGACAGAGGGAGTGGTGCTACTTGATCTCAGACCTCTGAAGGGGGAACGTGCCATTTTCCCTTTCcctctttattctctatgcccaTCAACCATGTGCCTCTTTATTCTCTATGGCCACCCCCCTGTGTCTCTTTATTCCCTAAGCCCACCACCctgtgtctctttattctctatgcccaccaccctgtgtctctttattctctatgcccaccaccctgtgtctctttattctctatgcccaccaccctgtgcctctttattctcta

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238133 lncRNA downstream 11610 98301093 ~ 98301413 (-) True G210195
TU238124 lncRNA downstream 16364 98296410 ~ 98296659 (-) True G210188
TU238112 lncRNA downstream 33483 98279191 ~ 98279540 (-) True G210176
TU238111 lncRNA downstream 38035 98274774 ~ 98274988 (-) True G210175
TU238110 lncRNA downstream 39177 98271116 ~ 98273846 (-) True G210174
TU238201 lncRNA upstream 13953 98366438 ~ 98366675 (-) True G210243
TU238559 lncRNA upstream 26674 98379159 ~ 98379385 (-) True G210521
TU238561 lncRNA upstream 29746 98382231 ~ 98382494 (-) True G210523
TU238566 lncRNA upstream 50650 98403135 ~ 98403367 (-) True G210528
TU238575 lncRNA upstream 85415 98437900 ~ 98451690 (-) True G210536
XM_036934496.1 mRNA downstream 168012 98127948 ~ 98145011 (-) False LOC118936884
XR_005039179.1 mRNA downstream 552223 97759882 ~ 97760800 (-) False LOC118943870
LOC118944211 mRNA downstream 555360 97757564 ~ 97757663 (-) True LOC118944211
LOC118944208 mRNA downstream 557296 97755630 ~ 97755727 (-) True LOC118944208
XR_005039176.1 mRNA downstream 589840 97721992 ~ 97723183 (-) False LOC118943868
XM_021617578.2 mRNA upstream 71530 98424015 ~ 98426658 (-) False lmo2
NM_001160508.1 mRNA upstream 71855 98424340 ~ 98426375 (-) True lmo2
XM_036960381.1 mRNA upstream 122249 98474734 ~ 98513861 (-) True LOC110500720
XM_036960421.1 mRNA upstream 169513 98521998 ~ 98535690 (-) True edc3
XM_036960425.1 mRNA upstream 235431 98587916 ~ 98601250 (-) False LOC110500748
TU238041 other downstream 167506 98144320 ~ 98145517 (-) True LOC118936884
TU237655 other downstream 693811 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 810629 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 895835 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 1890799 96421866 ~ 96422224 (-) True G208658
TU238753 other upstream 565963 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 589989 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 673247 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 770748 99123233 ~ 99123658 (-) True G211127
TU239562 other upstream 1263191 99615676 ~ 99615914 (-) True LOC118936886

Expression Profile