RNA id: XM_021617578.2


Basic Information

Item Value
RNA id XM_021617578.2
length 1814
RNA type mRNA
GC content 0.44
exon number 3
gene id lmo2
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98424015 ~ 98426658 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAGTAGTCGTGAGCAGGAAGGGTGAAACGAAACCAGAGACCGAGCTAGGGGGCAGGAGCTGGTATTTAAAAGCACGACGCAGCCGCTCAATAACGGAACCGCGGTAACGTTCATTCTCAGGACAGAGCGCGTCTGGAGAAGAAGGGAATATAAATAAGAACTGAAGAGGAAAGGGAGACTCAGTCAAGCAACCTTTGCTGATTTTAATTATTCTAGTGTTTGAAGACATATATACAGTCGCAATGGAATAAAAAAAATGCACTTATGAAAGACGAAGGCTACACCGAATTTCACCGCGGTTTCTCAATTGCCTGAGGAAATGTACAGAATAGCCTCCATCATTGAAAATGCGTCACATGTCAGGATGATCTTCGTTGGACATAGACTGCTGATTGAAATTATGTCATATAAAATGAAGGCAAATTCCGCGCGCAACTGACGTCTAGGGCGACATTATATCAGAGCAGGTGCAGTGTGTGTCCCTTCGAGATTTACCGTTACACGCGTGTTCCGAAGATTTAACTGTGACCGTGGTGTGGGCCTGCCAGGTTGATCACAGAGAAGAGAAGCGGGAACATCTTGATGTCAACCTGAGAAATAAAACATACTGGGAAAATGTCATCTGCAATTGAAAGGAAGACGATGGAGGCTAACGAGGAGCCGGTGGACGAGGTGTTACAGATGGCCCCGTCCCTCCTGAACTGTGGGGGTTGCCAGCAGAGCATCGGGGACAGGTTCTTCCTGAAAGCCATAGAGAAGTACTGGCATGAGGACTGTCTGAGCTGTGACCTGTGTGGCTGCAGACTGGGAGAGGTGGGACGAAGACTCTACTACAAACTGGGACGTAAGCTCTGTCGCAGAGACTACCTCAGGCTGTTTGGACAGGACGGGCTGTGTGCTAGCTGTGAGAAGAGAATCAGAGCGTTTGAGATGACCATGCGTGTGAGGGACAAGGTCTACCACCTGGAGTGTTTTAAATGCGCGGCCTGCCAGAAACACTTCTGTGTCGGGGACCGTTACTTGCTCATCAACTCAGACATTGTGTGTGAGCAGGACATCTTTGAGTGGACCAAACTCAACAACAACATGGTTTAGCAGATTCATGAACACTCTAGAACATTCTACAACACTTTAGAACACCTCAAAAACAAGGTGTAGAACACTCTAGAACATTCTACAACACTCCAGAGCACCTCAAAAACATGTTGTAGAAAACTCTAGAACATTGTAGAACACAAAGATGAGATGGTTTTGATTGTGATCGTGATCTCTCCATTTGGGATCAACAGCATGATAAAATATCTCCAGATGTACAGCAAGATAATAGATCTCAAACTTTCGGACAAAGGTCGCCACATACAGGCTCTCTTGTACCTCTCAAATCTGTTAGATGTTTGAAGAGAGTTGTTTCACCATTGATCTGTACTGGAGGCTAAATGAAGGCTCGATCCACCAGTGAATGGAGAACTGGTTCCACCCTTTCAAtgcaaaaaaaaaggaaaatgtaATAATGCAATAATCTATGTGCTCATTGCAGAAATCTCAATATTTCTTGTATCATACAGTTGTAATAGAGATTTGCTCATTGATCTAAATGATGAGCGATGTCACTGGAATTTGTTGTAGTCCAACACTGTTATTTCACCTCTAGAGAAATATGTATTATGACATTTGTTATGAATATATATAAAGTGTTATGTCCAAAAAGGTCTGGTCCATTCCAAAGTAATACATTCGTAAAGTAAAGGTCTGTTTGGGGAGTCCACATGCGCCCCCTAGTGGCCAAGTTCAAAATACAAGTTTCCAATCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238566 lncRNA downstream 20648 98403135 ~ 98403367 (-) True G210528
TU238561 lncRNA downstream 41521 98382231 ~ 98382494 (-) True G210523
TU238559 lncRNA downstream 44630 98379159 ~ 98379385 (-) True G210521
TU238201 lncRNA downstream 57340 98366438 ~ 98366675 (-) True G210243
TU238133 lncRNA downstream 122602 98301093 ~ 98301413 (-) True G210195
TU238575 lncRNA upstream 11242 98437900 ~ 98451690 (-) True G210536
TU238595 lncRNA upstream 45051 98471709 ~ 98471910 (-) True G210556
TU238613 lncRNA upstream 93780 98520438 ~ 98520783 (-) True G210569
TU238622 lncRNA upstream 109912 98536570 ~ 98536774 (-) True G210577
TU238625 lncRNA upstream 112735 98539393 ~ 98539655 (-) True G210580
XM_021578235.2 mRNA downstream 71530 98313023 ~ 98352485 (-) True LOC110500713
XM_036934496.1 mRNA downstream 279004 98127948 ~ 98145011 (-) False LOC118936884
XR_005039179.1 mRNA downstream 663215 97759882 ~ 97760800 (-) False LOC118943870
LOC118944211 mRNA downstream 666352 97757564 ~ 97757663 (-) True LOC118944211
LOC118944208 mRNA downstream 668288 97755630 ~ 97755727 (-) True LOC118944208
XM_036960381.1 mRNA upstream 48076 98474734 ~ 98513861 (-) True LOC110500720
XM_036960421.1 mRNA upstream 95340 98521998 ~ 98535690 (-) True edc3
XM_036960425.1 mRNA upstream 161258 98587916 ~ 98601250 (-) False LOC110500748
XM_021580609.2 mRNA upstream 216332 98642990 ~ 98689136 (-) True LOC110502529
XM_036960449.1 mRNA upstream 266098 98692756 ~ 98723102 (-) False LOC110500839
TU238041 other downstream 278498 98144320 ~ 98145517 (-) True LOC118936884
TU237655 other downstream 804803 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 921621 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 1006827 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 2001791 96421866 ~ 96422224 (-) True G208658
TU238753 other upstream 491790 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 515816 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 599074 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 696575 99123233 ~ 99123658 (-) True G211127
TU239562 other upstream 1189018 99615676 ~ 99615914 (-) True LOC118936886

Expression Profile