RNA id: XM_036960381.1


Basic Information

Item Value
RNA id XM_036960381.1
length 2954
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110500720
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98474734 ~ 98513861 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGCAGATAGCAATTCAACATCTAGAACTGCTACAGTTCTCGGCAACAATGTTCTAATGATAAATGCGATACATTTCTATCTTCAACGTTCTGAACTTTGCGCTCGGTGACCCTCTTGGCTAACTACGTGCATTTCGTACTACTAAGGCCGACAAAACGGCGCAGGAGCACGATTTGAAGTTTTGTGCATTCATTTAGCTAGTTTTCACAGTCGGATTAATTTCCAGGAACACTGTGCTTCATCTCACTCGTTTTGTGACTGGGTTGAGTTGTTTCGATGGTTATATCGCTCGACGGTTGAGACTCCGCCGTGTTGTTTTTCATCAAGCTCAAGAACAATTGACTGCAtcaccattattattatttttttgaatcGTTTTAACTGACTCGAATGTATATCACAACTGTCTCTGACATCTATTCCATCCACGTGTTTGCCACCTCTGCGTTCTTCTCATAGAGATGTATCGATTGACGTGTTGTTCCATTTGATAGgtgtgtgtgtgctatggTAACGTCTGGTGTGTGAGGCCTGCGTCAGGAGACCCCACTGCCTTGTTCAGCATGTCTGAATCCCAGACCCCATCATGGCCACGGGGCACAGAGTGTATGGCCAAGTACAACTTCAAGGGCACCACGGAGCAGGACTTGCCCTTCAACAAAGGAGATGTCTTAACCATCATCGTTGTCACTAAGGACCCCAACTGGTACAAAGCCAAGAACACAGCAGGTCGAGAAGGCACCATCCCAGCTAACTACGTCCAGAAGAGGGAAGGGGTGAAGCAAGGGGGCAAGCTGAGTCTAATGCCATGGTTCCATGGTAAGATCACCAGGGAGCAGGCAGAGAGTCTCCTGATCCCCCCAGAGACGGGCCTGTTCCTGGTCAGGGAGAGCACCAACTACCCCGGAGACTACACTCTGTGTGTCAGCTGTGACGGCAAGGTGGAGCACTACCGTATTGTGTACAAGGAGGGTCAGCTCAGCATCGACGAGGACGAGTTCTTCGAGAACCTCATGCAGCTGGTGGAGCACTATACCAAAGACGCAGATGGTCTCTGCACCAAACTGATCAAGCCGAAGCTGGAGGAGGGAACTGTGGCAGCCCAGGATGAGTTCTCTAGGAGTGGCTGGGCTCTGAACAGGAAGGAGCTTAACATTCAGCAGTCCATAGGCAAGGGAGAGTTTGGAGatgTGAAGGTGGGAGACTACAGAGGGACCAAAGTAGCTGTGAAGTGTATCAAGCATGATGCCACGGCACAGGCCTTCATCGCAGAGGCCTCAGTTATGACGCAGCTGAGACACAATAACCTGGTTCAGTTGATAGGTGTCATCGTTGAGGAGACGGGAAGCCTGTTTATTGTCAGCGAGTACATGGCCAAGGGCAGTCTAGTGGACTACCTGCGCTCCAGAGGCCGGACAGTGATCTTCGGGGATTGTCTACTCAAGTTCTCACTTGACGTGTGTGAGGCCATGGAGTATCTGGAGGCCAATAACTTTGTCCACAGAGACCTGGCGGCACGAAATGTCCTGGTGTCCGACGAAAACATCGCTAAGGTCAGCGACTTTGGCCTGACCAAAGAGGCCTCATCCAATCAGGACACGGCCAAACTGCCCATCAAGTGGACCTCGCCAGAGGCTCTGAGAGAAAAGAAATTCTCCACCAAGTCAGATGTGTGGAGCTATGGGATCTTGCTGTGGGAGATCTACTCCTTTGGCCGAGTGCCTTACCCCAGAATTccTCTGAAGGAGGTGGTACCACGCGTAGAGAAGGGCTACAAGATGGACGCCCCGGACGGCTGTCCTGAGGTGGTGTATGAAGTCATGAAGCAGTGCTGGACCCTGGACCCCCTGGTGCGACCTCGCTTCAGAGTCCTCCGGGAGAAACTGCATCATATCCTAGCCAAGGAGCTCTACCTTTGAGAGGATAGGaataggaggaaggggagagaggacaaGGGCGGCTCTCCTTTCattgaggaagaggggggaggtagagaaatgatgagagagagagagagagaggacagacaaggATTGCTCTTCTTTTGTGATGGGACCTGCCTTTATCGAGACCTCAGTCAGAGATCTTCCTTCCTCCCTTTATTTTTCTCCATAAATGAAAGAATCCCACCCGATTGTGTTAAGTTCACTGCTTTTCTGACTTGATGTTTTATAATTTCTCATTCTGTTGAAATGTTTTTGCCACTTGTTGgcacccccccccacacctcaGGGTTGCCtgtactacagtacagtagtgggtgtgtctgtctggctgactACAGTGTGTACCCAGTGTCAAACAAACCAATCCTGCCCTGTCGTGAGGTACTATACTCCTTTCACACTCTCGCACCGTGCTGGCtcaaatatgtttgtttttttttacattagatGTATAACCAGGCCAGTGCAGTAGGTAGAgcttggctcagtagtgtgaatcCACCCAGAGCCAGGTATTACACTTCCCATGTCCCTGCGCTCTACCCATACGGGTTAAAAGGGTATTAATCTGTGCCAAAGTGCCTCCAGAATGAACGCAGGACTATCCCCACAGACACGTCACGCCTCTACACGCTtgccttttttctttctttctattttTCTATGTTTTATACATGGTCTAATTTTCATTCCACATCCTTCTCTCTTATGGACAAGTGTTCATCTCACATTTACCAAACTGGAAAGCAGGACAAATCCTccaggaaaaaaagtatttgatgaCCTGTAACATGACAAAGAGCATGGGTACCAGAGGGAAAATACATTCTGGAGAAGGAAAAAAATAATACTTTTGTAACAGATAAATTTAAGGGTCTTGGAATATTCagagtaaaataaataaagttgAGAACTCAAATGGAACTGTGCATGTGGGATGAAAAGCCCTGATTCtaatgttattttttactttgcTGAGATGATTAAATCATTCCACTTAAATGTT

Function

GO: NA

KEGG:

id description
K05728 CSK; c-src tyrosine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238595 lncRNA downstream 2824 98471709 ~ 98471910 (-) True G210556
TU238575 lncRNA downstream 23044 98437900 ~ 98451690 (-) True G210536
TU238566 lncRNA downstream 71367 98403135 ~ 98403367 (-) True G210528
TU238561 lncRNA downstream 92240 98382231 ~ 98382494 (-) True G210523
TU238559 lncRNA downstream 95349 98379159 ~ 98379385 (-) True G210521
TU238613 lncRNA upstream 6577 98520438 ~ 98520783 (-) True G210569
TU238622 lncRNA upstream 22709 98536570 ~ 98536774 (-) True G210577
TU238625 lncRNA upstream 25532 98539393 ~ 98539655 (-) True G210580
TU238639 lncRNA upstream 44712 98558573 ~ 98565589 (-) False G210588
TU238637 lncRNA upstream 47530 98561391 ~ 98568696 (-) True G210588
XM_021617578.2 mRNA downstream 48076 98424015 ~ 98426658 (-) False lmo2
NM_001160508.1 mRNA downstream 48359 98424340 ~ 98426375 (-) True lmo2
XM_021578235.2 mRNA downstream 122249 98313023 ~ 98352485 (-) True LOC110500713
XM_036934496.1 mRNA downstream 329723 98127948 ~ 98145011 (-) False LOC118936884
XR_005039179.1 mRNA downstream 713934 97759882 ~ 97760800 (-) False LOC118943870
XM_036960421.1 mRNA upstream 8137 98521998 ~ 98535690 (-) True edc3
XM_036960425.1 mRNA upstream 74055 98587916 ~ 98601250 (-) False LOC110500748
XM_021580609.2 mRNA upstream 129129 98642990 ~ 98689136 (-) True LOC110502529
XM_036960449.1 mRNA upstream 178895 98692756 ~ 98723102 (-) False LOC110500839
XM_036960450.1 mRNA upstream 178895 98692756 ~ 98723102 (-) True LOC110500839
TU238041 other downstream 329217 98144320 ~ 98145517 (-) True LOC118936884
TU237655 other downstream 855522 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 972340 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 1057546 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 2052510 96421866 ~ 96422224 (-) True G208658
TU238753 other upstream 404587 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 428613 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 511871 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 609372 99123233 ~ 99123658 (-) True G211127
TU239562 other upstream 1101815 99615676 ~ 99615914 (-) True LOC118936886

Expression Profile