RNA id: XM_036960543.1


Basic Information

Item Value
RNA id XM_036960543.1
length 1868
RNA type mRNA
GC content 0.54
exon number 3
gene id LOC110510475
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98895140 ~ 98898124 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACAGCCATCCTGAAACTGCCGGGTAGGGCAACAGGTACGCATGCTTTTTCCTCGTGTGTATGTTTTCTTCAAATGATGACACTAGTGCAGACCTCTGCGTAGTTTGATCTGTCGACCTAACGAGCTACATGTATTTGGGTCAGAGGAGACATTGTTTTCCTGTACCTTTAAGAGTGGGGCGCAGTGTGCAGGACTACACTGGGGACGTAATTCAAACACTTGGCTCCTCCTAATTTTACGGTTTCGTTTCCTGGAGGTCGAGCCTGTCGTGTTGTTGACAAAAAAAACGTAACAAATATCGTTTTTTACTGGGCAAAATGGGTCAGTCGTTGCCGACCCCGGACTGCGAGCCCTCGGTGTGTCCTTTGTGCCACGGTATATGTCGGAATCCGACTGCGCTGAGATGCAAACATATTTTCTGCTACTGCTGTATACAGGAGTTATGGAGTGGTTCGCCCACCGGTCCATACTACTGCCCCGAGTGCAAGGAGGAGTACAAGACATTACCGGTGGGGTTCAAGAGAGACACTACCGCAAGTCCGTGGCGACATGAAGCGCCTGCACATACACGCACCAGCTCAGCGACAGAAGGCAGAGCCAATGAAGAGGATGTCATTGAGATCAATTCGGCGGGCTGGACCCTTGGGAAGAGAGCCTCCATCTCTCAATCCAAGCGTCTGTTAGGGAAGAGACCAGCCAGTTCTCCTGTCCCAGGAGGCCATCTTCACGACAACAAGAGACAAGCCACTGgcagctcctcttcctcccactccAGGGGAAGGTCTGGTGACCGTAAGAGACCCgccacttcctcttcctcctcttcagccaATCAGAACACATCGTCTGACGTCGAGTTGTCCAGTGAGGAGGAGGTGCCAGCAGCACCATTCTCCTTAGCAACCAAACCGTCTAGTACTGCGTCCGTCGCCGTCAGAGGTCCGGACCTGACACGTGATAGGTCTAGGTCCCCTAGGAGAGACCCACCCATTGAGCTGGACGAACCCCCTGCTGCAACAGAACCTCTTACAAGAGAACCACTGAATGACCCTAGAAAATCACCTGAAGCAGCAGCAGGTCACATGACCAACACATCGCCAAGAAGAATCACCGCCGTTGAGCTGGACCCACCTCTACCCCCTGCAAGAGATCCGTACACACCCGCCAAGAATCCTGCTGAAACGACCATAACAACCCATTTACGTTTAGTCACCCCTACGAAGGAGAAGCCTGTTGAAGCTGAGCGGGAGCCTCTTCCAGAGATCTCCAACAGATCTGGTCCAATCGGCACCTCCACCTCTCCTACCCGCGCTGCCAACAACCTGTCCCCTGGACGTACCAACCTGTCCCCCAGCCTGGCTCGTCAAACCTCTAGGGAGACCTTCCTACCCTGCCACTATTGCCCCAGCCAGGGCTCTCTCCCTGCGGTgaagacctgcctggtgtgtggaGCCTCCATGTGCTCCGACCACCTCCGGCCTCACCTGGAGTCCCCTGTCTTCCAGAGCCACACCCTGGTACCCCCTGTGGAGGACACCTCACCCTGGAGGTGCCCGGAACACCAGGAGATGAACCGAATCTACTGCCGTCAGTGTAGTGTGCGTGTCTGTACCGTGTGTACCGTGATCGGGTCGCACCGGGACCACGCTTGCGTCAGCATCAGAGAGGCCGAGAGGGAGCTGAGGGTGAGAAACAGAGGAGTGTTTACCAaacacacataccaacacaccACAAAAATACCTGATCACATCCCAGTTGTATGAGCCATAGTATTAATGTTGTCTAAGGATCGTTAGTGGTGAATAAACATATCACACGCGTTATAGTATAAATACGTGTTCCAGAGAGCTAAAGCATGTTTTCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238745 lncRNA downstream 53352 98835671 ~ 98841916 (-) True G210656
TU238813 lncRNA downstream 85265 98809799 ~ 98810003 (-) True G210710
TU238810 lncRNA downstream 108237 98786626 ~ 98787031 (-) True G210707
TU238809 lncRNA downstream 108808 98785611 ~ 98786460 (-) True G210706
TU238754 lncRNA downstream 109705 98784328 ~ 98785563 (-) True G210665
TU238832 lncRNA upstream 11812 98909936 ~ 98910293 (-) True G210728
TU238834 lncRNA upstream 34832 98932956 ~ 98955541 (-) False G210730
TU238835 lncRNA upstream 34832 98932956 ~ 98933448 (-) True G210730
TU238843 lncRNA upstream 65627 98963751 ~ 98964109 (-) True G210738
TU238862 lncRNA upstream 118589 99016713 ~ 99016971 (-) True G210757
XR_005039209.1 mRNA downstream 3125 98876074 ~ 98892143 (-) False LOC118943884
XM_036960538.1 mRNA downstream 3125 98876303 ~ 98892143 (-) False LOC118943884
XR_005039210.1 mRNA downstream 3125 98876662 ~ 98892143 (-) True LOC118943884
XM_021578182.2 mRNA downstream 40495 98842697 ~ 98854773 (-) True LOC110500681
XM_036960520.1 mRNA downstream 40566 98842437 ~ 98854702 (-) False LOC110500681
LOC118944227 mRNA upstream 10838 98908962 ~ 98909070 (-) True LOC118944227
XM_036960562.1 mRNA upstream 15891 98914015 ~ 98921036 (-) False LOC118943885
XM_036960568.1 mRNA upstream 19972 98918096 ~ 98921035 (-) False LOC118943885
LOC118944228 mRNA upstream 33754 98931878 ~ 98931986 (-) True LOC118944228
XM_036960525.1 mRNA upstream 38659 98936783 ~ 98944011 (-) False LOC118943882
TU238041 other downstream 749751 98144320 ~ 98145517 (-) True LOC118936884
TU237655 other downstream 1276056 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 1392874 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 1478080 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 2473044 96421866 ~ 96422224 (-) True G208658
TU238753 other upstream 20324 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 44350 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 127608 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 225109 99123233 ~ 99123658 (-) True G211127
TU239562 other upstream 717552 99615676 ~ 99615914 (-) True LOC118936886

Expression Profile