RNA id: XM_036960526.1


Basic Information

Item Value
RNA id XM_036960526.1
length 2981
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC118943882
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98936783 ~ 98944041 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCACAATCACAGCCATCCTGAAACTGCCGGGTAGGGCAACAGGTACGCATGCTTTTTCCTCGTGTGTATGTTTTCTTCAAATGATGACACTAGTGCAGACCTCTGCGTAGTTTGATCTGTCGACCTAACGAGCTACATGTATTTGGGTCAGAGGAGACATTGTTTTCCTGTACCTTTAAGAGTGGGGCGCAGTGTGCAGGACTACACTGGGGACGTAATTCAAACACTTGGCTCCTCCTAATTTTACGGTTTCGTTTCCTGGAGGTCGAGCCTGTCGTGTTGTTGACAAAAAAAACGTAACAAATATCGTTTTTTACTGGGCAAAATGGGTCAGTCGTTGCCGACCCCGGACTGCGAGCCCTCGGTGTGTCCTTTGTGCCACGGTATATGTCGGAATCCGACTGCGCTGAGATGCAAACATATTTTCTGCTACTGCTGTATACAGGAGTTATGGAGTGGTTCGCCCACCGGTCCATACTACTGCCCCGAGTGCAAGGAGGAGTACAAGACATTACCGGTGGGGTTCAAGAGAGACACTACCGCAAGTCCGTGGCGACATGAAGCGCCTGCACATACACGCACCAGCTCAGCGACAGAAGGCAGAGCCAATGAAGAGGATGTCATTGAGATAAATTCGGCGGGCTGGACCCTTGGGAAGAGAGCCTCCATCTCTCAATCCAAGCGTCTGTTAGGGAAGAGACCAGCCAGTTCTCCTGTCCCAGGAGGCCATCTTCACGACAACAAGAGACAAGCCACTGgcagctcctcttcctcccactccAGGGGAAGGTCTGGTGACCGTAAGAGACCCgccacttcctcttcctcctcttcagccaATCAGAACACATCGTCTGACGTCGAGTTGTCCAGTGAGGAGGAGGTGCCAGCAGCACCATTCTCCTTAGCAACCAAACCGTCTAGTACTGCGTCCGTCGCCGTCAGAGGTCCGGACCTGACACGTGATAGGTCTAGGTCCCCTAGGAGAGACCCACCCATTGAGCTGGACGAACCCCCTGCTGCAACAGAACCTCTTACAAGAGAACCACTGAATGACCCTAGAAAATCACCTGAAGCAGCAGCAGGTCACATGACCAACACATCGCCAAGAAGAATCACCGCCGTTGAGCTGGACCCACCTCTACCCCCTGCAAGAGATCCGTACACACCCGCCAAGAATCCTGCTGAAACGACCATAACAACCCATTTACGTTTAGTCACCCCTACGAAGGAGAAGCCTGTTGAAGCTGAGCGGGAGCCTCTTCCAGAGATCTCCAACAGATCTGGTCCAATCGGCACCTCCACCTCTCCTACCCGCGCTGCCAACAACCTGTCCCCTGGACGTACCAACCTGTCCCCCAGCCTGGCTCGTCAAACCTCTAGGGAGACCTTCCTACCCTGCCACTATTGCCCCAGCCAGGGCTCTCTCCCTGCGGTgaagacctgcctggtgtgtggaGCCTCCATGTGCTCCGACCACCTCCGGCCTCACCTGGAGTCCCCTGTCTTCCAGAGCCACACCCTGGTACCCCCTGTGGAGGACACCTCACCCTGGAGGGGAACCTGAAACAGGAGATGAAGAAGATGCAGGGAGCGGAACAGTCTTTAATCAGCAGAGTGACTGAGATGACAGAGAAGAAACAGAGATTCCAGGTGTCGTCAACAACGTAAAAGGAATTGATGCCATAAGCCCGTCTTCTAAAGATGAGTTCAGAGTTTGAAAAGTTGTTAAAAGACAAGAAATCACCTTTTGAGACGTCAATACACTATTCCGGCTTCCTAGAGTCCTTGTTTCGAGACCTCTGTCTCATTAGAGGTAGAGGACTTGAAGAAAGTCAGCAACTCCCTCACAGTCTTACTAAGTGAAAAACAGAAACAAGAAAAGCAGCTGAATAAagggaagaagaaaaagaaaggtGTGGTTGCTGCCGGAGGGATGAAGTCCAAGATGAAGGATGACCTATCGGACTACGGAGAGTTCGATGGAGGTTACGCACAAGACTACGAGGACTTCATGTGACGTGACACCAACCCGATTTCTGTCTCAAacgacaccctgttccctatgtagaaccctttatataggggatagggtggcaTTTAGTAGGGTTCCAATGTCTGTCCCCATTCCCCCTCCGCTCTGCTCCACCAAGCCCCCTCAGGGCATGACCTATGACCTATTCTACTGCCCAGAGCCATCCAATGATAACCACCCTTATGTCGCCAGCCGCACACAAACTCGATTCTGAAAAGAAGTGTTGAATGGTTTGACGAGGAACGTCTGATTTCAGCAGGGTTGTTTCTCCTCGTTAGAAATTCCTTCAACGATTCCTCGAAACTGACTGACCAATAAGACTGTGTTCTGGATACCAAAATGTTTCACCTCCCATAATGAGATGCGAAAACCCAGCATCaaacttgttttttttcccaATCCTAGAATGAATTTAATTAGATCTTTTAAAATAAATGATCTGTCAAACAAAATTTAATTGTTACTGTTTGACgaaggaaaatacattttgtattttaCATTTTGCATTTCAATAAATAGCCGTAGGGTCAAGTAGTAAACACGGCGCTGACCATTTCATCCTGGGCCTATGTTCACAAAACGTCTGAGTAGATacgctgatctagaatcagatgGCCCCCCCccttcttattcattatgatcagaAAAagactaaactgatcctagagcaGCACTGCTACACTGAGAAACCCAGTATAATCGCTTCCACTGAGTTGAAGCAACAATCACTCTAGGTCTCCTTGGCATAACTTTGCACGGCTTGTATCAAGTGAGGTGAGAAACAGACCAAATGTATTTAGGAAAGAAGGTTGTACTGGGTTATTATCACTTGTTTTTCTTTTTCACAGCACATTTTCAGGATTGGTAATGGAAATATAAACAATATTAAAGATTAAAGTTGTCTTATTTTATCCACCTAATTTAATAAAATCACtgttttaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238835 lncRNA downstream 3335 98932956 ~ 98933448 (-) True G210730
TU238832 lncRNA downstream 26490 98909936 ~ 98910293 (-) True G210728
TU238745 lncRNA downstream 94867 98835671 ~ 98841916 (-) True G210656
TU238813 lncRNA downstream 126780 98809799 ~ 98810003 (-) True G210710
TU238810 lncRNA downstream 149752 98786626 ~ 98787031 (-) True G210707
TU238843 lncRNA upstream 19710 98963751 ~ 98964109 (-) True G210738
TU238862 lncRNA upstream 72672 99016713 ~ 99016971 (-) True G210757
TU238865 lncRNA upstream 74106 99018147 ~ 99018442 (-) True G210760
TU239308 lncRNA upstream 151058 99095099 ~ 99095361 (-) True G211106
TU239309 lncRNA upstream 151897 99095938 ~ 99096218 (-) True G211107
LOC118944228 mRNA downstream 4797 98931878 ~ 98931986 (-) True LOC118944228
XM_036960562.1 mRNA downstream 15747 98914015 ~ 98921036 (-) False LOC118943885
XM_036960568.1 mRNA downstream 15748 98918096 ~ 98921035 (-) False LOC118943885
LOC118944227 mRNA downstream 27713 98908962 ~ 98909070 (-) True LOC118944227
XM_036960543.1 mRNA downstream 38659 98895268 ~ 98898124 (-) True LOC110510475
LOC118944200 mRNA upstream 5867 98949908 ~ 98950121 (-) True LOC118944200
LOC118944229 mRNA upstream 10090 98954131 ~ 98954239 (-) True LOC118944229
XM_036960574.1 mRNA upstream 14987 98959028 ~ 98967298 (-) True LOC110500849
XM_036960590.1 mRNA upstream 30803 98974844 ~ 98995846 (-) False ctdspl2a
XM_036960604.1 mRNA upstream 30803 98974844 ~ 98995850 (-) False ctdspl2a
TU238041 other downstream 791266 98144320 ~ 98145517 (-) True LOC118936884
TU237655 other downstream 1317571 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 1434389 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 1519595 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 2514559 96421866 ~ 96422224 (-) True G208658
TU238870 other upstream 81691 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 179192 99123233 ~ 99123658 (-) True G211127
TU239562 other upstream 671635 99615676 ~ 99615914 (-) True LOC118936886
TU239603 other upstream 766660 99710701 ~ 99713563 (-) False LOC110502568
TU239696 other upstream 912272 99856313 ~ 99857855 (-) True G211402

Expression Profile