RNA id: XM_036960574.1


Basic Information

Item Value
RNA id XM_036960574.1
length 2133
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC110500849
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98959028 ~ 98967298 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttcacttcatgaaacatggtaccaacactttacatgttgcgtttatatttttgttcagtgtagatcgGGTACACCAATATAATTGACTGCTTAAGCTGCACCCCACAATAGTACTGACCAGTCACAAAAATGACTATGAAATCACCTTATATTCAGTGAAATGAAGAAAGATATGaatttttatttttcataattttaGATATTCTGTACATGTGTAACTGACAGTATTTTTTTGGGGGCTTGATCTAATTCTATGGTGTCACTAAATAGGGAGCAGCAATGACTGGACAGACAAGAATAATGGGAGCACACACACGACAGCACACGTACGTTAATTTTCTCTCGGAACCAAAGAGCCAGTTACCGATTGTACACACACGGAATTCATTATGATCAGACACACAGGCAAGATGGCGGAGGGAGATTCATGGGATGCGGACACTTTTGATCCGGATGAGCTTGTTATCGGGACCAAGAAGGCTGTTGTAGCGGATAAATGGGAAGGCGAGGACGAGGATGACGATATCAAGGACAACTGGGATGATGACGAGGAGGAATTGAAAAAAACAGAAGAGAAAAAAGCAGCAGAGACAAAACTATCTGAAAAGAAGAAATTAGCTGAAAAAATCAAGGAAAAGGAAAGTTTACAAATGAAAAAACAAGAAGAGCTGAGAAAGCGgttAGAGGAATCACAGGAAACAGAACTCTCACCGGAGGATGAGCTAGCAGAGAAACTCAGAGTGAAGAAGCTACAGGAGGACGCTGATCTTCTATTGGCTCAGGAGGCTTTCGGTGTCGTCAACAACGTGAAAGGAATTGATGCCATAAGCCCGTCTTCTAAAGATGAGTTCACAGAGTTTGAAAAGTTGTTAAAAGACAAGATATCACCTTTTGAGACGTCAATACACTATTCCAGCTTCCTGGAGTCCTTGTTTCGAGACCTCTGTCTCTCATTAGAGGTAGAGGACTTGAAGAAAGTCAGCAACTCCCTCACAGTCTTACTAAGTGAAAAACAGAAACAGGAAAAGCAGCTGAATAAagggaagaagaaaaagaaaggtCTGGTTGCTGCCGGAGGGATGAAGTCCAAGATGAAGGATGACCTATCGGACTACGGAGAGTTCGATGGAGGTTACGCACAAGACTACGAGGACTTCATGTGACGTGACACCAACCCGATTTCTGTGTCTCAAacgacaccctgttccctatgtagaaccctttatataggggatagggtggcaTTTAGTAGGGTTCCAATGTCTGTCCCCATTCCCCCTCCGCTCTGCTCCACCAAGCCCCCTCAGGGCATGACCTATGACCTATTCTACTGCCCAGAGCCATCCAATGATAACCACCCTTATGTCGCCCGCCGCCAGCCGCACACAAACTCGATTCTGAAAAGAAGTGTTGAATGGTTTGACGAGGAACGTCTGATTTCAGCAGGGTTGTTTCTCCTCGTTAGAAATTCCTTCAACGATTCCTCAAAACTGACTGACCAATAAGACTGTGTTCTGGATACCAAAATGTTTCACCTCCCATAATGAGATGCGAAAACCCAGCATCaaacttgttttttttcccaATCCTAGAATGAATTTAATTAGATCTTTTAAAATAAATGATCTGTCAAACAAAATTTAATTGTTACTGTTTGACgaaggaaaatacattttgtattttaCATTTTGCATTTCAATAAATAGCCGTAGGGTCAAGTAGTAAACACGGCGCTGACCATTTCATCCTGGGCCTATGTTCACAAAACGTCTGAGTAGATacgctgatctagaatcagatgGCCCCCCCccttcttattcattatgatcagaAAAagactaaactgatcctagagcaGCACTGCTACACTGAGAAACCCAGTATAATCGCTGCCACTGAGTTGAAGCAACAATCACTCTAGGTCTCCTTGGCATAACTTTGCACGGCTTGTATCAAGTGAGGTGAGAAACAGACCAAATGTATTTAGGAAAGAAGGTTGTACTGGGTTATTATCACTTGTTTTTCTTTTTCACAGCACATTTTCAGGATTGGTAATGGAAATATAAACAATATTAAAGATTAAAGTTGTCTTATTTTATCCACCTAATTTAATAAAATCACtgttttaagaa

Function

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03245 EIF3J; translation initiation factor 3 subunit J

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238834 lncRNA downstream 3487 98932956 ~ 98955541 (-) False G210730
TU238835 lncRNA downstream 25580 98932956 ~ 98933448 (-) True G210730
TU238832 lncRNA downstream 48735 98909936 ~ 98910293 (-) True G210728
TU238745 lncRNA downstream 117112 98835671 ~ 98841916 (-) True G210656
TU238813 lncRNA downstream 149025 98809799 ~ 98810003 (-) True G210710
TU238862 lncRNA upstream 49415 99016713 ~ 99016971 (-) True G210757
TU238865 lncRNA upstream 50849 99018147 ~ 99018442 (-) True G210760
TU239308 lncRNA upstream 127801 99095099 ~ 99095361 (-) True G211106
TU239309 lncRNA upstream 128640 99095938 ~ 99096218 (-) True G211107
TU239310 lncRNA upstream 131812 99099110 ~ 99099313 (-) True G211108
LOC118944229 mRNA downstream 4789 98954131 ~ 98954239 (-) True LOC118944229
LOC118944200 mRNA downstream 8907 98949908 ~ 98950121 (-) True LOC118944200
XM_036960526.1 mRNA downstream 14987 98936783 ~ 98944041 (-) False LOC118943882
XM_036960525.1 mRNA downstream 15017 98936783 ~ 98944011 (-) False LOC118943882
LOC118944228 mRNA downstream 27042 98931878 ~ 98931986 (-) True LOC118944228
XM_036960590.1 mRNA upstream 7546 98974844 ~ 98995846 (-) False ctdspl2a
XM_036960604.1 mRNA upstream 7546 98974844 ~ 98995850 (-) False ctdspl2a
XM_036960597.1 mRNA upstream 7546 98974844 ~ 98996174 (-) True ctdspl2a
XM_021578332.2 mRNA upstream 30113 98997411 ~ 99013141 (-) False LOC110500795
XM_021578338.2 mRNA upstream 30113 98997411 ~ 99013377 (-) True LOC110500795
TU238753 other downstream 12959 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other downstream 15231 98942474 ~ 98943797 (-) True LOC118943882
TU238041 other downstream 813511 98144320 ~ 98145517 (-) True LOC118936884
TU237655 other downstream 1339816 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 1456634 97501172 ~ 97502394 (-) True G209802
TU238870 other upstream 58434 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 155935 99123233 ~ 99123658 (-) True G211127
TU239562 other upstream 648378 99615676 ~ 99615914 (-) True LOC118936886
TU239603 other upstream 743403 99710701 ~ 99713563 (-) False LOC110502568
TU239696 other upstream 889015 99856313 ~ 99857855 (-) True G211402

Expression Profile