RNA id: XM_036960590.1


Basic Information

Item Value
RNA id XM_036960590.1
length 3437
RNA type mRNA
GC content 0.46
exon number 13
gene id ctdspl2a
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98974844 ~ 98996174 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatatatatatatatcagtgtaGTTCAATCGAATGCGTCCACTGTTTATGATGAGGCGAGAAATGGCGTCCACAGAGCCCGTCAGTGGTATGTGGTCCTAAACACAACGGACAGCCACACGGCTCTCTCGGTGGCCGCATAGTTGCGGGCTACCAGTGGACAGGGCGAGCGGCCGACTTTAGTTACGAGTTTCTTGGACCATTTGTCTTCCATGTAACGTGTAGGATGATGAGGCTGAGAGTACGGAAGGCTTCTCAGCAGCCCAAACCCAGCCCCGGCCGTCCAGCCTCAGAACCCCGCCCAGCTCAGGCCAAGAGAAAACACTGCGAGGTGGCGCCCCCGCCCAGGAGAGGCCTCAGGATGCAGAAGAATGAGGCTGGCCTGTTCTCTACCATCAAGAAGTTCATCAGGGGAAATGCTGTCAAGgTAGAGCAGGACATCCCAGCTAAGAGGAGTCGTATTGATTGTAAAGTGGAAAACAGCAACCTGATCACGTCTTCTCCTCACCCACCAACCAAAGCCATCGGCAGGGGCTGCAGGAGAGGTGCTAACAAACCTGAACCGATGACGTTGAACAGTAAGCCCCTGAAGCCCAACGGTAAACTGGAGGTCCCCGTGGAGGAGGCGAGCAGTCCACCTCGCACCACTCTCCTGGGGACCATCTTCTCTCCCGTCTTCAACTTCTTCTCTCCTGCTACCAAGACAGCCACTCCTGAGTCTGGCTCCCCCGGGCAGGGGGGGTCGGAGGCTGAGGAGATGCCGAAGCAGCTGGAAAAGGAGACGGTGGTGGAGGAGATACCCACCAGTACCCCTGCATCTACAGGGGGCGTCGTCCTGTCCTCTGTTGCCCCAGCTCCATCAGTACCCCCACCACAACAGGCTCCTCTGGCTACCCCAGAACCATCTGTCGAAGGAGGGGAGATGGCTACAGATATGCCCCCTCTAACAGCTCCGGGCTGCATTCCAGTCCGCTGTTACCCCCACATCTCTCCCACGGCCCCTGCAGAGGGCACCTACGAGGAGGACTGGGAAGTCTTTGATCCGTACTTCTTCATCAAGCACGTGCCTCCGTTGACAGAGGAGCAGATAGCCAGGAAACCAGCACTGCCCCTTAAAACACGCAGCACACCAGAGTTCTCCCTAGTTCTAGATCTGGACGAGACGTTGGTGCACTGTAGTCTGAATGAGTTGGACGACGCAGACCTGACCTTCCCTGTCCTGTTCCAAGACGTCATCTACCAGGTGTACGTGCGGTTGAGGCCGTTTTTCAGAGAGTTCCTGGAGCGCATGTCTCAAATTTACGagATCATTCTGTTCACTGCCTCTAAGAAGGTGTATGCAGACAAGCTGCTCAACATCCTGGACCCCAAGAAACAGTTGGTCAGACATCGGTTGTTCCGTGAGCACTGTGTATGTGTTCAAGGAAACTACATCAAGGACTTAAACATTCTGGGAAGAGATCTTTCTAAGACTGTAATAATAGACAATTCACCTCAAGCCTTCGCCTATCAGCTTTCCAATGGGATTCCCATCGAGAGCTGGTTCATGGACAGGAATGATAGCGAGCTCCTCAAGCTGGTTCCTTTCTTAGAGAAGCTGGTGGAGATGaaTGAGGACGTAAGGCCTTACGTCAGACAGCAGTTTCGTCTTCATGACCTACTTCCTCCCGACTGATCCGTGATTGGCCGACCCAGCAGGCTAACCCATAGAAGTAGAATGTGTACATTATTCATTCTGGTTCTACGGGCTAAACCTCCCAGCACACGGAGAGGGGATGCCTTCCGTCCAACACGGTTGGAGATGACGAGAATCAACTTCCAACTGACTCTGAGGATGTCGTCCAAGTGGAGAGCTGTCTACAGCATTGCCCGTTACCAACGAGAATCTGTTCAACAAAATAACAGTTTACAGAGGGACATTTGTATCTAAACAACtacaaaacaaatattttgaaGCTATGtatatgttttgtatactcaaacTAAACTGTTATATTCCAACTAAactgtacacccccccccccccccaagagtaTAGCAGTCCCCTTGTATTACGAAAGGCATCTGTCTGGACAGACCTCAAGTCTATGCTCAAaagcagggttgtgttcattagggtgCGAACGTTACAAAACATTTTAGCAACGGCGAacgaaaaatgtgcttttctcaTTGGACAACTCCAGGTAGAACATCCTCCATTTCAGGAACGTTTTCTTGGGTTTTGGTGCCTAAATGAACACGATCCTGGCGACTTTCTGTGAGATGTTTTCTCGTCCGCAGCTTCAGTTTTGGACTGACGGAACTGAATGGCGGTATTTGACTGCTCAAGACTCATTTTAACAGGAACGGGCAGTCAAACCTGTATAATATACAAACGTAATTACATGTATATATGAcatgtatatatcttttttttcttcttcatggtttttaaaaacgtttttttttttttgtgcttcCGATTTTATTTTAGCTGACtgttttattttactattttagtaaataaaaaaaaatgtttttacctttttaaaaaaaaaatatttttttgttgttgtttgtttttgaaGTTGATGCTACACAGCTGCTGTTGTCTTCCTGCAAtttatgcatcccaaatggcaccttattccctactgtatatagtgcccttcttttgagcagagccctatgggcactggtcaaaagtagtgcactatatagggaataaggttctatagggccctggtctaaagtagtgcactatatatagggttctatagggctctggtctaaagtagtgcactatatagggaatagggagcattCTTTATTTTCTAGTCTGCTTTTTAGTCCCATTAACTACTGTTATGTGGTCTCTGTaacaacaggtttttaaaaatatatttgggaggaaatgttTATGAAATCATGATGGGTTTTTTAAggttatgtaaatgtattatagTGTTTTAACTTGAAGACCCTTCAACAAGCTGGCCTGGATATTAATTTAGATCATGTATATTTGAGATTTCACCCCTGAAAGATGTTGAAACGACCCTTAGCTGCTCTGTGTCTGGGTggtgatgggagggagggaaggaaggaaggaaggcttCAGAGCTCTCCTGCCCTATGGAAAATCTTGTCAATCTTTGTACACACGTTATCACCTCTAAATTGTGAATGCCCGTACAATTTTGAAATTGTAGCACCAGCAAAATGGCCAACATTTTGTTTTATCTTTTAAATCTTGTTTTCAATGCTGTTCATAGTCTTGTCTGTGAAATCTCTTTTATGTAGGAGTCAcacattttttaaagaaaataaatagGAAAAGACTCCGTTGTTGTCATTGACCGTCTTGGACGGCCACTCCTGTTGTACTCCGTGTTACTTCATGGTTTCCTTGatcataaatacatttttatacaatTAATAAAAATGTGTGATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238843 lncRNA downstream 10735 98963751 ~ 98964109 (-) True G210738
TU238834 lncRNA downstream 19303 98932956 ~ 98955541 (-) False G210730
TU238835 lncRNA downstream 41396 98932956 ~ 98933448 (-) True G210730
TU238832 lncRNA downstream 64551 98909936 ~ 98910293 (-) True G210728
TU238745 lncRNA downstream 132928 98835671 ~ 98841916 (-) True G210656
TU238862 lncRNA upstream 20867 99016713 ~ 99016971 (-) True G210757
TU238865 lncRNA upstream 22301 99018147 ~ 99018442 (-) True G210760
TU239308 lncRNA upstream 99253 99095099 ~ 99095361 (-) True G211106
TU239309 lncRNA upstream 100092 99095938 ~ 99096218 (-) True G211107
TU239310 lncRNA upstream 103264 99099110 ~ 99099313 (-) True G211108
XM_036960574.1 mRNA downstream 7546 98959028 ~ 98967298 (-) True LOC110500849
LOC118944229 mRNA downstream 20605 98954131 ~ 98954239 (-) True LOC118944229
LOC118944200 mRNA downstream 24723 98949908 ~ 98950121 (-) True LOC118944200
XM_036960526.1 mRNA downstream 30803 98936783 ~ 98944041 (-) False LOC118943882
XM_036960525.1 mRNA downstream 30833 98936783 ~ 98944011 (-) False LOC118943882
XM_021578332.2 mRNA upstream 1565 98997411 ~ 99013141 (-) False LOC110500795
XM_021578338.2 mRNA upstream 1565 98997411 ~ 99013377 (-) True LOC110500795
XR_005039228.1 mRNA upstream 158413 99154259 ~ 99166351 (-) False galk2
XM_036960690.1 mRNA upstream 158414 99154260 ~ 99165018 (-) False galk2
XM_036960677.1 mRNA upstream 158414 99154260 ~ 99166352 (-) True galk2
TU238753 other downstream 28775 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other downstream 31047 98942474 ~ 98943797 (-) True LOC118943882
TU238041 other downstream 829327 98144320 ~ 98145517 (-) True LOC118936884
TU237655 other downstream 1355632 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 1472450 97501172 ~ 97502394 (-) True G209802
TU238870 other upstream 29886 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 127387 99123233 ~ 99123658 (-) True G211127
TU239562 other upstream 619830 99615676 ~ 99615914 (-) True LOC118936886
TU239603 other upstream 714855 99710701 ~ 99713563 (-) False LOC110502568
TU239696 other upstream 860467 99856313 ~ 99857855 (-) True G211402

Expression Profile