RNA id: XR_005039228.1


Basic Information

Item Value
RNA id XR_005039228.1
length 2350
RNA type mRNA
GC content 0.47
exon number 11
gene id galk2
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 99154259 ~ 99166352 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTGCTGCGCAGCGTGAACATGAGAGGGAATCGTGATTCCTTTGAACTGGTCCCTTTTCCTACTCTTCCGTATTGTTTCGTTTTGTTACAATGAATGTGTTTGCAGCTGATCTAGAAACAGTTACTTTGTTTAACAGAAAGCGTTTGAGGTAGCGATTTTTGGTGGGTAGAGCTGGTCGTAGATCAGCTTTTCAATAATATCCGGGACTCTCGTGTGACAGTCAGCTGATATAGTATTAGGTGtgtttctatatattttttcccctcagTACAGTACTCCAGATAGATCTAGTTGCAATTAGATTTGGTGATTTAACAATAGTCTAAAACCAACCGGTAAGAACTGGTATTTGGTTTGAAAAAATGGCAGCACACCCGCCAAAGACAAAGATTCTGATAAGTGCAAATAAAAGGTTGCAAAACCTGAAAGAGGCCTTCGAGAAAAAGTATGGAGAAGCACCTCTTTTTTACGCACAAGCTCCTGGAAGAGTCAATCTAATAGGAGAACACATTGACTACTGTGGTTATGCTGTGCTCCCAATGGCTATTGAGCAGAGTATTCTTGCTGCGGTCACTGTCAATGATTCCAAGAAAATCAACCTGGCCAACACAGAACCTAAATACAAggacTTTACAGTCTCTTCAGAAGATATGGAGATAGACAAGGACAATCCTCAGTGGTACTATTACTTTCTCTGTGGGGTGAAAGGGATTCAGgagCACCTAGGGAAGGTTCCTCTGTCTGGGATGAAGTGTGTTGTGGACGGGACCATCCCGGCTAGCTCAGGCCTGTCCAGCTCCAGTGCCCTGGTCTGCTGTGCTGCGCTCCTCACTATGGAGGTTAACCACAAGTCCCTCAACAAGGTGGCGCTGGCAGAGATTTCAGCCAAGTGTGAGCGCTACATTGGCACTGAGGGTGGGGGCATGGACCAGTCCATCTCATTCCTGGCAGAGGAAGGAACTGCCAAGCTGATCGAGTTCCAACCTCTGCGGGCGTCTGACGTACGTCTCCCTGAGGGAGCAGTGTTCGTTATCTCTAACTGCTGCGTTGAGATGAACAAGGCTGCTACCTCTCACTTCAACATCCGGGTGGTCGAGTGTCGGATAGCCACCAAGATGTTGGCGAAGGCTCGGGGGCTGGAGTGGGGCCGGCTGCTGAAACTGTCCCAGGTGCAGACAGAGCTGGAGGCCTCTCTGGAGGAGATGCTGCGGCTGGTGGCTGAGGTGCTGCACCCTGAGCCCTACAGCAGAGAGGAGGTCTGCAAGGCCCTGGGAATCACCACAGAACAGCTCTGTACAGACCTCCTTAGCCCCAACACACAGCACGtGGCCCAGTTCAAGCTGTACCAGCGGGCCAGGCATGTATACGGCGAGGCGGCACGGGTCCTGCGGTTCAAGAGCGTGTGTGATGAAGCTCCCACCGCCCCGAACGCCGTGCAGCGTCTAGGAGACCTGATGAAGCAGAGCCATGCCAGCTGCAGAGACCTGTACGAGTGCAGCTGTCCAGAACTGGACCAGCTGGTAGAGATATGTCTGCAGTCTGGTGCGGTGGGATCCCGGCTGACCGGAGCAGGCTGGGGGGGCTGTGCTGTCTCCATGGTCCCCACTGACAAGGTGGAGTCTTTCCTAAAGAGCGTCAGAGAGTTGTACTACACGGCAGACCCACGCAGAGCCGAGCTAGAGAAACACAGTCTGTTTGTCACCAAGCCTGGTGGAGGGGCGGCCATTTTCCTTGAagactgaaataaaaaaaatgcttcTCTTTACAATTTTGAGGTGAAATGTCTTCCTTGCCGTTTCACCTTTTCAGTATTTTTATACTATTATTTTAGTCGTGACTCTATGACTAATTCTCATGCCAAAATGACACAGTTGATGATTCTGGAATTTCAAGGGCAATGATAATCAAAGCTAGTCTGCTCCCAGatttgttgtctccttctatagcctgatcccagatttgttgtctccttctatagcctgatTCTAGATCTGTTTGTCCTCTTGCCAACTTCATTGCTTAATTTTCAAGCCAAACATGACAAGAAGTTGGCATGACAGCACAAAAAGACTGGCACTATTTCATAGGGGGAAAAATGTAGACATTTTATAATTTGGAACTCAAGTTATAACTAGTTTTAAAACTAATGATTCAAGATCAACTTCTTTACAAGAAAGGGGACTTTTCTTTTATTCTGTGAGTGTAATGATTTCAGTTGAAACGGGACAGCGCTATCTATATAAAGTACAATACTTTTCCACACAGTGCAGTACTACATTCCTTCcattgctgtgtgtgtttgtgttgtatgttttGAAGGAATTAAGAAGTAAAAAGGCTTTTGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239345 lncRNA downstream 337 99153561 ~ 99153922 (-) True G211141
TU239346 lncRNA downstream 2168 99151807 ~ 99152091 (-) True G211142
TU239341 lncRNA downstream 9255 99144685 ~ 99145004 (-) True G211137
TU239340 lncRNA downstream 9822 99144122 ~ 99144437 (-) True G211136
TU239336 lncRNA downstream 18253 99135719 ~ 99136006 (-) True G211132
TU239347 lncRNA upstream 12382 99178733 ~ 99179737 (-) True G211143
TU239329 lncRNA upstream 13908 99180259 ~ 99181029 (-) False G211126
TU239330 lncRNA upstream 13908 99180259 ~ 99180835 (-) True G211126
TU239354 lncRNA upstream 15333 99181684 ~ 99181992 (-) True G211148
TU239357 lncRNA upstream 21078 99187429 ~ 99187801 (-) True G211150
XM_021578338.2 mRNA downstream 140882 98997411 ~ 99013377 (-) True LOC110500795
XM_021578332.2 mRNA downstream 141118 98997411 ~ 99013141 (-) False LOC110500795
XM_036960597.1 mRNA downstream 158085 98974844 ~ 98996174 (-) True ctdspl2a
XM_036960604.1 mRNA downstream 158409 98974844 ~ 98995850 (-) False ctdspl2a
XM_036960590.1 mRNA downstream 158413 98974844 ~ 98995846 (-) False ctdspl2a
XM_036960758.1 mRNA upstream 55499 99221850 ~ 99375962 (-) False tjp1b
XM_036960728.1 mRNA upstream 55499 99221850 ~ 99503454 (-) False tjp1b
XM_036960752.1 mRNA upstream 55499 99221850 ~ 99503454 (-) False tjp1b
XM_036960717.1 mRNA upstream 55499 99221850 ~ 99503455 (-) False tjp1b
XM_036960722.1 mRNA upstream 55499 99221850 ~ 99503455 (-) False tjp1b
TU239331 other downstream 30601 99123233 ~ 99123658 (-) True G211127
TU238870 other downstream 128141 99025732 ~ 99026118 (-) True G210765
TU238753 other downstream 208190 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other downstream 210462 98942474 ~ 98943797 (-) True LOC118943882
TU238041 other downstream 1008742 98144320 ~ 98145517 (-) True LOC118936884
TU239562 other upstream 449325 99615676 ~ 99615914 (-) True LOC118936886
TU239603 other upstream 544350 99710701 ~ 99713563 (-) False LOC110502568
TU239696 other upstream 689962 99856313 ~ 99857855 (-) True G211402
TU239747 other upstream 793206 99959557 ~ 99963474 (-) True G211447
TU239998 other upstream 906896 100073247 ~ 100073797 (-) True G211630

Expression Profile