RNA id: XM_036960758.1


Basic Information

Item Value
RNA id XM_036960758.1
length 7010
RNA type mRNA
GC content 0.55
exon number 29
gene id tjp1b
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 99221850 ~ 99503455 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAAGCGCGATAATTATGCGTTTCCAGTGGAATGACGCGTGATGCTGCGTTACTCTCCACGTCCCCATCTAGTCCACCACCGGAGAAAAGCATTGGTCTATCCCAGGCAGACCGGTCACTGTAGCCGCGCTGTTGAGGAGGAAACCGAACCGTACTGGTCGAGGGGAAAGGCATCCTGTGCCTCTCTGCCTTTTGCAGTGCGGCTGCTTTGGAGATACGAGGGACAATTCATCTATTCCTTTCCTGAAAGGAAGGATTTCACCCATAAATTATAAGGACCAGTACACCGAAAAAGAGCGCAGCAATGGAGGAGACAGTCATATGGGAGCAGCACACAGTAGCTCTACACAGAGCACCAGGGTTTGGCTTTGGGATAGCCATCTCAGGAGGTCGGGATAACCCTCATTTCCAGAGTGGTGAGACCTCCATCGTCATCTCAGACGTCTTGAAGGGAGGGCCAGCTGAGGGCCTACTGCAggagaatgacagagtcacGATGGTCAACGCCGTCTCCATGGACAACGTGGAACACGCATACGCAGTCCAGCAGCTACGGAAAAGTGGCAAGAATGCAAAGATTACAATCAGACGGAAGCGGAAGGTGCATGTACCCATGGGTCGTCTTGGGGAGAGGGAGACCATGTCGGAGcatgaggaggacgaggaggacagTTACGACGAAGAGATATACGAGACGCGTTCCACACGCAGCGGCCCCAACGCCTACAGCGGCGTGGGAGGGGCCTCGGCCCGGCGCAGCGGGAGAAGCACGGGGAGGCGGGaccgggacagagagagggaacgcAGCGGCTCACGGGAGAGGAGTCTCTCCCCGCGCTCCGACCGGCGCTCACTCAACCAGCCCCCGCGGCCCGCCAAAGTCACCCTCGTCAAGTCCCGCAAGAATGAAGCAGAATATGGCCTTCGCCTGGCCAGCCACATCTTCGTGAAGGACATCTCCCCCGAGAGCCTGGCGGCCAGAGACGGAAACATACAGGAGGGAGACGTAGTACtgaagATCAACGGCACGGTGACAGAGAACCTGTCGTTGATAGACGCTAAGAAGCTGATTGAGAGGTCAAAGGGCAAGCTAAAGATGGTGgtgcagagagacgagagagctACGCTGCTGAACATACCAGACCTGGACGACAGCGTCCCATCAGCCAACGCCTCCGACAGAGACGGTGAGGGACACTAcatagACATTTCAGATATCCATTCGGTGGCGTCCGACCATTCCAACCGATCCCACGACAGACATCGTAGCGGCCGGTCCCGCTCCCCTGACAAGCGGTCCGACCACTCCAGACACTCCCCTCCACAGATCACCAACGGCAGAAGTCGTGAGGAGGAGAGGATCTTGAAGCCGACAGCGGTACCAGCCAAGTTAGCAGAGGAGGTTCCTGCCCTGCCAAAACCCCTGGAGCAGCTGGTCACCAGGGAGGAGAAACAGTTACCACCTCTACCAGAACCCAAGCCAGTATATGCCCAGCCAGGCCAGCCTGATGTGGACCTGCCAGTCAGCCCCTCTGATGCCCCTGTGCCCAGCGCTGCCCACGATGACAGTATCCTACGGCCGAGTATGAAGCTGGTGAAGTTTAAGAAGGGGGAGAGTGTGGGTCTGAGGCTGGCCGGGGGGAACGACGTGGGCATCTTCGTAGCAGGAGTCCTGGAGGACAGCCCAGCAGCTAAGGAGGGTCTGGAGGAGGGGGACCAAATTCTCAGGGTTAATAATGTAGATTTTGCAAATATAATCCGAGAAGAGGCGGTGCTGTTCCTCCTTGACCTCCCTAAAGGTGAAGAGGTCACCATCCTGGCCCAGAAGAAGAAGGATGTGTACCGGCGGATCGTGGAGTCTGATGTGGGCGACTCGTTCTACATCCGGACCCACTTTGAGTATGAGAAGGAGTCTCCGTACGGCCTGAGCTTCAACAAGGGAGAGGTGTTCAGAGTGGTGGACACCCTGTACAACGGCAAGCTGGGCTCCTGGCTGGCCATCCGCATAGGGAAGAACCATCAGGAAGTGGAGAGAGGCATCATACCTAACAAGAACAGAGCGGAGCAGCTGTCCAGCGTGCAGTACAGCCTCCCCAAGACAGCAGGGGGCGACAGGGCAGACTTCTGGAGGTTCAGGGGCCTGAGGAGCTCCAAGAGGAACCTGAGGAAGAGCAGAGAGGACCTGTCGGCCCAGCCCGTCCAGTCCAAGTTCCCTGCATACGAGAGGGTGGTGCTTAGAGAAGCTGGTTTCCTGAGGCCTGTGGTGATATTTGGACCCATCGCTGACGTGGCACGAGAGAAGCTCTCCCGAGAGGAGCCCGATCTTTTCGAGCTCGCAAAGAGTGAACCTAGAGACGCAGGGAAAGACCAGCGTAGTTCGGGAATCATCCGTCTCCACACCATCAAACAGATCATCGACAGAGACAAACATGCAGTGCTGGACATCACCCCCAACGCAGTAGACCGTCTGAACTACGCCCAGTGGTACCCCATCGTAGTGTTCTTGAACCCAGACAACAAACAGGGGGTCAAGAACATGAGAACCAGGCTATGTTCCGAGTCCAGGAAGTCCGCCCGGAAACTCTACGAGAGGGCCCTGAAATTAAGGAAGAACAACCACCATCTCTTCACCACCACCATCAACATGAACAACATGAACGATGGCTGGTACGGAGCTCTGAAGGAGACTATCCAGCAGCAACAGAACCAGTTGGTCTGGGTGTCAGAGGGCAAGgCGGACGGCGCGCCGGACGATGACCTGGACATCCATGATGACCGTCTGTCATACCTGTCAGCCCCAGGCAGTGAATACTCCATGTACAGCACGGACAGCCGCCACACCTCTGATTACGAGGACACGGACACAGAGGGCGGGGCCTACACCGACCAGGAATTAGACGAGACTCTCAACGACGAGGTTGGTCTTCCCACGGAGCCAGCTATCACCCGCTCCTCAGAGCCGGTCAGAGAGGACCCGCCCGTCATCCAGGACCCCTCGACTGGCGGTTACCCTGGATACCAGCACGTTGCCGTGACTCCGCCCGACCCGGCCAACCGCATCGACCCGTCCGGGTTCAAAATGGCCGCCGCTCCTCATCAgCAAGACGATGCTGCTCTTCTGGCTATTccttcctctctgctgcctgctgcgGTGGCTGTGGCGCCCCCTGTTGTTGAGGCTGAGTCACAGCAACCTGCACTGCAGGTAGAGGGTATGACCTCTGAACCCGAGGAGGAGGCTCCGGCTGCAGACTCACTCCTTAGCAGCCCCGCCCCTACTGAGCTAGCCCCGCCCCCAACACCACCATCACTCGAACCCCAACCCCTGTCTGACACGCAGCTCGGCCCTGGTCCTGAACCCAAGATGTACAAGAAGGATCTGTACAGTCTGGAGGAACCAGTGAGAGTGAACCACGGCGGCATGAAGTCGTCTCTGAGCTACACCCACCAGCCCTACCAGGACCAACAGCCACACCGCCAGTACGACCACCCGCCTTACGGCTACTGTAGCGACGGGGGGGGCTACGCCGAACCAAAGCAGCCTCCCCAGGGGAACTTTGACCCTCACACTTCTCACCTGCACTACAACAACCGTGTGCCTCAACACTTTGCCGACGGCCAGTGGCCCCCCTACGACCAGCAGACCTCTTCCCCCCAGCCCCCGGCGTACCAGCCTGGCCCAGGCCACCAGCAGGGCTACACTCCCAGGGGGACCACCCCCTACGAGGACGGCCCAGTCAGGGACTACAGCCCCCCCCAGCCCTGCTACGATGAGGCACCGGCGGGGATGCAGGGCTACGACGGCAGGCCTCGTCATGGTAAAACTCCGGGGCCTATGCGGTACGATGAACCGCCTCCCCCGCCCTCGGCTGGCCCTTACGACGCTCGCTCCCCTTACGAGTCCGAGTCCCCTCACTGCTACCCCGTAAGCTCGCCCCGCTCCCCAGACCCCCCCAAGCAGTATTTCGGGGACTCTGCTCCTGGCCTGAGACCCTCCTATAACCCAGGACCTCCCAGCCGGGGCGGTGGCTACAACCGTGAACCTCTAATGACCTCTGACCCGCCCTTGCCCCCTCCCAAACCTGAACCCCTGGCCTCCCCAGGAGAGATGGGAGTAAACGCGGGGTCCAAGCCCCcgggggaggaggaaagggacGACCCGGCCATGAAGCCCCAATCGGTGCTCAACAGGGTCAAGATGTTTGAGAATAAAAGGTCGTTGTCTGTTGACCGAGCCAAGGAGGCTGACGACTCTACCATGACGAGGCCTGCTGACCTGCCCAGACCTGTGACTGCACCTGGGCCtgtccccaaagccaactccctCAGCAACCTGGAGCAGGGGAAGGctacttacagAGCCCCCGAGTCCCAGAATCCCCCTGGGGCTAAACCCCTGGACCACTGCGATGCTGACGAGGATGAGGAGTACTACAGGAAACAGCTGTCCTACTTTGACCGACGCAGCTTCGACAGCAAGGCCATGAACCCCAGCCCTGGCGTCAACCGCTTCCCACCACAGACCCAGCTGGCTTACCCTTACAACAGGGCCGAGTCTGTGGAGAAGGTGAGTCCGGTAGAGAAGAGGTACGAGCCCCTCCCCCAGATCAGCCCTGTGTCTCAGTACGGACCACCCAGCCCTGCTGTTCCACCCAACAGCCTGCCCAAACTCATCCCCAACGACGtgaacTCTCACCCCGACCAGCTCCTCAGCTCCTCTCCAAAACTTGACCTCTCTGGTCTCCGCCCCCCTGTCCTCCAGGACCCCCCTTCCCAGCCCTACCTGGCCCAGAGGTCCCCAGTGGGGGTCAACGGCACTGACGCACCCCCCAAAACCCCTGGAACCACTCCCACCCCACAAAGCTACAACCGATACGTCCCTAAGCCGTACACCTCCTCAGCCCGGCCCTTCGAGAGGAAGTTTGAAAGCCCCAAGTTCAACCACAACCTCCTCCCCAACGACAGTGGGAAGACAGACCTCCTGATCAGTAGCAGCAACCCTAAACCCAGCGtggtcaacaacaacagcagGACCAAGCCTCCACTGTCTCCTCAGGCCCTGGACCACGACAGTGGACTGGACACGTTCACACGCACCATGGACAACAGGGGGCCCAAGTACCAGCAGCACAACAACTTAGTCAACAATGCTGTGTCCAAGGCCATACCTGTCAGcCCCAGTGCTCTGGAGGATGACGAGGAGGACGAAGGTCACACAGTGGTGGCCACGGCCCGTGGGATCTTCAACTGTAACGGCGGGGTGCTGAGCTCCATCGAGACGGGAGTCAGCATCATCATCCCCCAGGGAGCCATCCCCGACAGCATAGAACAGGAGATCTATTTCAAGGTTTGCCGGGACAACAGCATCCTGCCCCCGCTGGACAAGGAGAAAGGAGAGACCCTGCTCAGCCCTCTGGTGATGTGTGGGCCTCACGGTCTTAAGTTCCTGAAGCCGGTGGAGCTGCGTCTACCTCACTGTGCGTCTATGACCCCAGATGGTTGGTCTTTTGCTCTAAAATCCTCCGACTCCTCGTCGGGTGACCCCAAGACATGGCAGAACAAGTCTCTTCCAGGAGACCCCAACTACCTGGTGGGAGCCAACTGTGTGTCTGTGCTCATCGATCACTTCTGAACATAGAGGGAGACAGCTGGCCTGTTACTGAATGTGTTAGATCAGGGGACAGCCACAGACTGCAACGTTACCCCCACTCTCCTGCTGTTGTGACCCCTTTGCCCTGTTGTCTCCCTCCCAGGCAGCAGGAGGCAGCACTGCTTGACTTGATGAAGTACGAACTTTTATTCTTGAATATATTCTTATGTTCTTGAACTTGAATATTGAACATTTAAAGTTGTTTATGGTGACCGCCCCTGGGAAAAGTAGGAGGAGTCCCAGTGAAGTGGGAGGAGTCTGAACACAGCAGCCTATCCCAGCGCTGTGCTCTCTTTTTCCCACccaccctttttttttttttggtgcttTAACTAAAGGCTTGCAAAAactctaaaactgttaaaaacgaaaatatataataaaaatgGAACTGTTGTTGGAATGCATGACCAGTGCCACAGACTGACTGAATAATAATCTAATTAAGATTTTTTTCAAAATTTTTAGCAGGTTGCAAGACAgagaaacatttttaaaaaaataaaaaaatcaagatgaggataatttttttaattaattgAATATTGCAACGGAAATTTTACAACTTACTGTATGCACTCACAAACAGAAAAGTTGGTATATGCAAAAGCCTTTTTGTTTGTGAGGTTGTTTGTGGTCATGCGTTTCGCTCTTAAGGATACCTGAGGACTGTGGAAATGCAGCTGAGCCTCACTCAAGGGTTATGAGGGAACCTTGGCACTGTAGGCATCGTTTAAAACACAACACCGTTTTGAAGGTAATGCTGAAGACTGAAGTTAATGTATTGGCATTGGGATGCCCCCGTCTGACTGGTTTAGAAGAACTACTGAATGTTTTTAGATCAAAAAAATGTCACTGACTTGATTTGACAAACTCCTGCAGCTGTCTAGAGATCTATGCATGTGCTTCGACTCAGGTCCggaagcctgctactactactaagtTCAAAACACATTAAAAGTCCCATCTTACACTGCAAGCAGTGATGCCTTATCTGCATTTTaactataaaaaaaaacatcagaTCTTTACGTTTTAGTGATTTAAAAAATTATGgggtgagaaaaaaaagaaattggaacaaaataaatgtaatttcaCTGCATTTTGAACCAGTTGTATCAGTGAACTTGGATTCACTATACTATGAGGCTGATGAAGAGGTCATGCTTTCTTTTCCTGCTATGCATATTAAAGTTTCTGAGGAAATACTACCAATGGAAAAACACTAGAACGTTTCAATTGTGGCTGTATATAATGCTAGCACACGGCCTTGGTTCGCTTTAAATTAACTTTTGTACATCTTTGTCATTTTGTATaaaaagaggtaaaaaaaaataattgtttattaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239382 lncRNA downstream 222 99221139 ~ 99221628 (-) True G211175
TU239357 lncRNA downstream 34049 99187429 ~ 99187801 (-) True G211150
TU239354 lncRNA downstream 39858 99181684 ~ 99181992 (-) True G211148
TU239329 lncRNA downstream 40821 99180259 ~ 99181029 (-) False G211126
TU239330 lncRNA downstream 41015 99180259 ~ 99180835 (-) True G211126
TU239453 lncRNA upstream 1992 99377954 ~ 99378289 (-) True G211234
TU239459 lncRNA upstream 9061 99385023 ~ 99385686 (-) True G211239
TU239465 lncRNA upstream 16744 99392706 ~ 99394137 (-) True G211244
TU239448 lncRNA upstream 29396 99405358 ~ 99405939 (-) True G211229
TU239490 lncRNA upstream 107719 99483681 ~ 99483963 (-) True G211263
XM_036960677.1 mRNA downstream 55498 99154260 ~ 99166352 (-) True galk2
XR_005039228.1 mRNA downstream 55499 99154259 ~ 99166351 (-) False galk2
XM_036960690.1 mRNA downstream 56832 99154260 ~ 99165018 (-) False galk2
XM_021578338.2 mRNA downstream 208473 98997411 ~ 99013377 (-) True LOC110500795
XM_021578332.2 mRNA downstream 208709 98997411 ~ 99013141 (-) False LOC110500795
XM_036960769.1 mRNA upstream 167827 99543789 ~ 99582886 (-) True duox
XM_036960779.1 mRNA upstream 224823 99600785 ~ 99615331 (-) True LOC110500900
XM_036934513.1 mRNA upstream 239870 99615832 ~ 99619142 (-) False LOC118936886
XM_036960789.1 mRNA upstream 321257 99697219 ~ 99725326 (-) False LOC110502568
XR_005039255.1 mRNA upstream 321257 99697219 ~ 99725326 (-) False LOC110502568
TU239331 other downstream 98192 99123233 ~ 99123658 (-) True G211127
TU238870 other downstream 195732 99025732 ~ 99026118 (-) True G210765
TU238753 other downstream 275781 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other downstream 278053 98942474 ~ 98943797 (-) True LOC118943882
TU238041 other downstream 1076333 98144320 ~ 98145517 (-) True LOC118936884
TU239562 other upstream 239714 99615676 ~ 99615914 (-) True LOC118936886
TU239603 other upstream 334739 99710701 ~ 99713563 (-) False LOC110502568
TU239696 other upstream 480351 99856313 ~ 99857855 (-) True G211402
TU239747 other upstream 583595 99959557 ~ 99963474 (-) True G211447
TU239998 other upstream 697285 100073247 ~ 100073797 (-) True G211630

Expression Profile