RNA id: TU239245


Basic Information

Item Value
RNA id TU239245
length 1991
RNA type TUCP
GC content 0.49
exon number 4
gene id LOC110500919
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 99896619 ~ 99899881 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcaataaagccccttgaattgaattgagagagagaggcacacagagagagagagagaggcacagagagagagagagagagaggcacagagagagagagagagaggcacagagagagagagagagagagagagagagagagagaggcacagagagagagagagagaggcacagagagagagagagagagagagagagaggcacagagagagagagagagagaggcacagagagagttttttttctctctgtctacATACAATCTGCTGCACCAcgagagaaaagggagggagcCACACGGTCTTTTTTTGTGTAGGTGGTCTGGCTAGTAGCTGTGTGTCTAGTGTTGTTGGTGTAACCTTCGTTTTTGTAGAAAACTGGACATTTACATAGTTCGCCATGTCCGAGGAGATTGAAGGAACAAGGCCTGCCGTCGGGGAGGCAGCCCACGAGGAACAGCAGGAGATGGATGACACAGTCCTCAGCCCGGAGAAGGCAGAGGAGGTGAAACTCAAGGCCAGGTTCCCTCATCTTGGAGCCAAGCCTGGGGGCTCTGACCTGCTCCGGAAACGGATTCAGAAAGGGCAAAAGTTCTTTGACTCTGGGGACTACAACATGGCCAAGGCTAAGGTGAAGAACAAGCAGCAGCTCCCTGCAGTGACGCCGGCTGAGAAGGCAGAGATAACCGGGGACCACATCCCCACACCCCAGGACATCCCCCAGAGGAAGCCCTCCATCGTGGCCAGCAAACTGGCTGGCTGAGGGGCTGATGGAAACAGGGAAGCTTTGGAAAATTTgaaatctgttctgttctggtgttaccattccatcgctctctctctctctctcctctctctctcatgccagTCCCAATTCAATCCCTACTTCCTTTACCTCTTGGCCCTAACCCTTCAATGTTTGATATATCTTGCTGTGGCTTCCACCACAGTACCTACACCTTACAGATTTGCAATCATTGAATGGTTAGAGCCAGAGGGAACAGGCAGAGAGGTAATTCAGATCAGTGcattctgtctccctccatctcttttctTTCCTAGACAGCTGTATTCTGCCCCCCAATTTTTTGtcctcaccatcaccaccatctctATATGAATTctgaaaaataatatttttgagaATCAAGCAGAAAGACTCCTGAGAAATATTGCTGCCAGAGGAGGACTGTCTTCGGATACTGACTGAAAAAATTGGTTTAAAGGGACACGTTTTTTGCAAAGTCTAGTTCAAAGTGGCCTGTATCTACTGTAGTGACTTATGTAAACTGTACATAGCCTATCACCATGTATGGGAGAGGCCAGGTCAATATCTTAGACATGTTTTACCTTCTATGGCTTCCGTTGACATTTTAAATTGTGAGGTAATATTCTAGAACCAACCGATGAGAATTCTTGATCACTCTTAGAATCCTGTTCTGGTTCCAGATCTATTTCTGTTTGTCTGGACAGCTTCTTGACCTTACAGTCATTGTCTAGACAACACAAACCGATCTGGTACCATCAGTCAAATGCCCTCCTCCACTGTCCAAAAGCTATGTTGTTTGTTTTGATGCATTGATTGAACATAGCCTGTATCGCACAGTAGCTGTCATGTATATTATGACTCTCATCTAAACCTCTTAAATGACCTTTAACAGTTTATGAGCCTCTGTTTTCTCTTGGGCAATATTTGCTCACTCACTCCAGTGAGAGAATCTCTGCTTGTCTGATGATATggatccctatatagtgcactccctgtgaggctctggtcaaatgtagtggacTAGGGGTTAGGATGCCATTTCTGATGACATAGCCTCTGTGAATCTAGCCTAGGAATGCCTGCCTGCCTCTATATCTGAGACTCGGGTAAATTAGGTTTAGTAGTCGAGCAACTCGCTTTAAATGAAGTGTTGGTTTGAACGGTGTGCATGTGCATTGACTGTGCAGTCACGTTGTGCCATTTGTAAATAAAATAGTTTTGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239268 lncRNA upstream 14288 99881799 ~ 99882331 (+) True G211071
TU239237 lncRNA upstream 18458 99877724 ~ 99878161 (+) True G211054
TU239240 lncRNA upstream 47298 99844992 ~ 99849321 (+) True G211057
TU239133 lncRNA upstream 237141 99656774 ~ 99659478 (+) False G210982
TU239276 lncRNA downstream 4222 99904099 ~ 99904439 (+) True G211077
TU239255 lncRNA downstream 51521 99951398 ~ 99951756 (+) True LOC110500932
TU239289 lncRNA downstream 72198 99972075 ~ 99973929 (+) True G211087
TU239300 lncRNA downstream 93685 99993562 ~ 99994333 (+) True G211098
TU239304 lncRNA downstream 105174 100005051 ~ 100005413 (+) True G211102
XR_005039265.1 mRNA upstream 4850 99884154 ~ 99891769 (+) True LOC118943910
XM_036960800.1 mRNA upstream 19405 99835618 ~ 99877214 (+) True LOC110502588
XM_036934519.1 mRNA upstream 77825 99777695 ~ 99818794 (+) False LOC110502581
XM_036960784.1 mRNA upstream 218120 99636736 ~ 99678499 (+) True LOC110502564
XM_036960764.1 mRNA upstream 299011 99583011 ~ 99597608 (+) False duox2
XM_036960820.1 mRNA downstream 5763 99905640 ~ 99951701 (+) False LOC110500932
XM_036960824.1 mRNA downstream 13367 99913244 ~ 99951701 (+) False LOC110500932
XM_036960843.1 mRNA downstream 53386 99953263 ~ 99998171 (+) False LOC110502593
XM_036960838.1 mRNA downstream 53386 99953263 ~ 99999874 (+) False LOC110502593
XM_036960828.1 mRNA downstream 53390 99953267 ~ 100008473 (+) False LOC110502593
TU239221 other upstream 82244 99813165 ~ 99814375 (+) True LOC110502581
TU239220 other upstream 84692 99805168 ~ 99811927 (+) False LOC110502581
TU239134 other upstream 174636 99720179 ~ 99721983 (+) True G210983
TU238947 other upstream 658361 99237378 ~ 99238258 (+) True G210823
TU238516 other upstream 970213 98902788 ~ 98926406 (+) True G210484
TU240232 other downstream 559780 100459657 ~ 100461981 (+) True G211779
TU240278 other downstream 567801 100467678 ~ 100468157 (+) True G211809
TU241421 other downstream 1582534 101482411 ~ 101486796 (+) False G212656
TU241428 other downstream 1582534 101482411 ~ 101486796 (+) True G212656
TU241453 other downstream 1609883 101509760 ~ 101510842 (+) False G212674

Expression Profile