RNA id: TU239887


Basic Information

Item Value
RNA id TU239887
length 347
lncRNA type sense_over
GC content 0.39
exon number 2
gene id slc5a12
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 100177192 ~ 100209223 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACAGGACACACCAGGAGTCAAGATGTGAAACCGTGGCTCCTACGACCGGTTTGTAACCTCTTCTGCTTTTGGTCAAAGAAGTACAagaagatgtgttggtgtggcGTCCATCACGAATTAAAACAGGACATGGAGTGCCCAGACACAGACACGGTTAAAGACGAAGGTCCCTTTGTCAAGGAAGATATCGGCAGGAAGGGGATGAAGAGGAAAGTACAACCTGCCAAAAACTGTTATAACCTGCAAGAGAAAGCACATGACAACGCTGGCTTTACCGAAGACACAAAGCCTTTTTAAAAAGCCATAGAACTAGAATGACTACTTACTGTAATTCTATGTGTGTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239905 lncRNA upstream 10676 100193323 ~ 100195665 (+) True G211551
TU239878 lncRNA upstream 33710 100172264 ~ 100172631 (+) True G211541
TU239863 lncRNA upstream 45577 100160238 ~ 100160764 (+) False G211532
TU239864 lncRNA upstream 45577 100160238 ~ 100160764 (+) True G211532
TU239868 lncRNA upstream 46854 100155685 ~ 100159487 (+) True G211533
TU239893 lncRNA downstream 784 100209949 ~ 100211816 (+) True G211545
TU239897 lncRNA downstream 9049 100218214 ~ 100220348 (+) True G211546
TU239912 lncRNA downstream 14891 100224056 ~ 100224330 (+) True G211558
TU239916 lncRNA downstream 19959 100229124 ~ 100229337 (+) True G211562
TU239917 lncRNA downstream 41000 100250165 ~ 100250370 (+) True G211563
XM_036960908.1 mRNA upstream 65765 100133134 ~ 100140576 (+) False LOC110500984
XM_036960904.1 mRNA upstream 65765 100134189 ~ 100140576 (+) True LOC110500984
XM_036960870.1 mRNA upstream 127931 100051852 ~ 100078410 (+) False LOC110502598
XR_005039287.1 mRNA downstream 133385 100342550 ~ 100351946 (+) False LOC110501220
XM_036960970.1 mRNA downstream 133396 100342561 ~ 100351946 (+) False LOC110501220
XR_005039288.1 mRNA downstream 133422 100342587 ~ 100351946 (+) False LOC110501220
XR_002470188.2 mRNA downstream 133424 100342589 ~ 100351946 (+) False LOC110501220
XM_021578575.2 mRNA downstream 133891 100343056 ~ 100351946 (+) False LOC110501220
TU239241 other upstream 306464 99896619 ~ 99899877 (+) False LOC110500919
TU240232 other downstream 250492 100459657 ~ 100461981 (+) True G211779
TU240278 other downstream 258513 100467678 ~ 100468157 (+) True G211809
TU241421 other downstream 1273246 101482411 ~ 101486796 (+) False G212656
TU241428 other downstream 1273246 101482411 ~ 101486796 (+) True G212656
TU241453 other downstream 1300595 101509760 ~ 101510842 (+) False G212674

Expression Profile