RNA id: XR_005039304.1


Basic Information

Item Value
RNA id XR_005039304.1
length 466
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC118944013
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 101536030 ~ 101536754 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAATGACCCATATAACATAGTATTACCCCCCTGACGGTGCTATAGGGAGAGACCTAGAAGCAGGGTAACTAGAGATTATTATGTAGTCTGGGTGTTCTATAATACTAGAAGCAGGGTAACTAGAGATTATTATGTAGTCTGGGTGTTCTATAATACTAGAAGCAGGGTAACTAGGGATTATTATGTAGTCTGGGTGTTCTAGAAGCAGGGTAACTAGGGATTATTATGTAGTCTGGGTGTTCTAGAAGCAGGGTAACTAGGGATTATTATGTAGTCTGGGTGTTCTAGAAGCAGGGTAACTAGGGATTATTATGTAGTCTGGGTGTTCTAGAAGCAGGGTAACTAGGGATTATTATGTAGTCTGGGTGTTCTATAATACTAGAAGCAGGTAACTAGGGATTATTATGTAGTCTGGGTGTTCTATAATACTAGAAGCAGGGTAACTAGGGATTATTATGTAGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241611 lncRNA downstream 14100 101521092 ~ 101521930 (-) True G212768
TU241605 lncRNA downstream 26292 101508773 ~ 101509738 (-) True G212764
TU241588 lncRNA downstream 59558 101476053 ~ 101476472 (-) True G212747
TU241411 lncRNA downstream 63915 101471827 ~ 101472115 (-) True G212649
TU241406 lncRNA downstream 68606 101467219 ~ 101467424 (-) True G212644
TU241557 lncRNA upstream 17648 101554402 ~ 101556378 (-) False G212739
TU241562 lncRNA upstream 17648 101554402 ~ 101555735 (-) False G212739
TU241563 lncRNA upstream 17648 101554402 ~ 101555735 (-) False G212739
TU241565 lncRNA upstream 17648 101554402 ~ 101555735 (-) False G212739
TU241573 lncRNA upstream 17648 101554402 ~ 101556378 (-) False G212739
XM_021578707.2 mRNA downstream 85866 101414312 ~ 101450164 (-) True pgghg
XM_021578717.2 mRNA downstream 85868 101414312 ~ 101450162 (-) False pgghg
XM_021578728.2 mRNA downstream 85868 101414312 ~ 101450162 (-) False pgghg
XM_021578743.2 mRNA downstream 85868 101414312 ~ 101450162 (-) False pgghg
XM_021578752.2 mRNA downstream 85869 101414312 ~ 101450161 (-) False pgghg
XM_036961083.1 mRNA upstream 23513 101560267 ~ 101595386 (-) True LOC110512506
XR_005039305.1 mRNA upstream 164632 101701386 ~ 101703960 (-) False LOC118944014
XR_005039306.1 mRNA upstream 164632 101701386 ~ 101703960 (-) False LOC118944014
XR_005039307.1 mRNA upstream 164632 101701386 ~ 101703960 (-) True LOC118944014
XR_005039310.1 mRNA upstream 169251 101706005 ~ 101706647 (-) True LOC118944015
TU240995 other downstream 356269 101101934 ~ 101179761 (-) False LOC110502631
TU240823 other downstream 821777 100696706 ~ 100714253 (-) True pkp3a
TU240400 other downstream 1056240 100470802 ~ 100479790 (-) True LOC110502607
TU240399 other downstream 1063506 100469266 ~ 100472524 (-) False LOC110502607
TU240396 other downstream 1080597 100455149 ~ 100455433 (-) True G211904
TU241686 other upstream 175484 101712238 ~ 101712847 (-) True G212829
TU241693 other upstream 182613 101719367 ~ 101719732 (-) True G212836
TU241748 other upstream 206261 101743015 ~ 101746551 (-) False LOC110517830
TU241746 other upstream 206308 101743062 ~ 101746551 (-) False LOC110517830
TU241747 other upstream 206308 101743062 ~ 101746551 (-) False LOC110517830

Expression Profile