RNA id: XM_021578996.2


Basic Information

Item Value
RNA id XM_021578996.2
length 1134
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110501429
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 102262117 ~ 102278883 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAACTGCCAATCCTCCACTTCCCCTGTAGTTTACTGGAGACTACAATCGTCATTCACTCTGCTGAAGactagagagaacacacagacaacatcatGAAACAAATGGTCATATTTGGGGTTTTTGCTTTTGCTACATTCTACATGGTTCACACTGAAGTACCAGAGTACTGTTCCCTACCACAGGATGAGGGTACAGCTCCAACCTCAGGAGCAGATGACTTCCAGATCCTGCTGTATTATGACGCAGCAAAAGACCTGTGCTACCCCTTCAAGTACCTGGGGGAGGGCGGCAACGCTAACCGCTTCACCCTGGAGAAGCTCTGTATGAGGAACTGTTCTGCCAAGGCAGAGGAGATCTATCCCGTGGACGAGTCAAAAGCCTGCCACTTCAAGAAGGCTCTGGGTGAATGCTTTGGCACCTACCTGCGTTATTTCTACGACCCCATCCATGAGAAGTGTAAGAAGTTTCACTGGACTGGCTGTGTGGGGAACGGGAACAGGTTCATCGACCATCAGGCCTGTAATGCCACCTGTGCTGGGATTCATGATGAGGgtactgaagaggaggaggatgagccCGATACTCCTGTTGCCCTGATTCTAGGAGTGGTGTTTGGGATCACTGGAGCAATACTCATCATAGTCATTGTTGTCCTGGCCATGCAGAGCAAGAAGAATCACAAAAGTGATACAAAGAAAGTGAAAGATGTCAAGCTGGAGACACAACTGCAAGAAGAACCAATTGAGATGGCgtagagaagagaagacaacCATGAAAGGAAATTAGAATGACTAGAACGCATGATTTCATTCATGTCAGCGTCCATGATGAGTTGACGGGAAGCCATATTGAGTGTACACATGCCAGTCATTCTAATTGTAGGGGAAAAACCAGCTCTGGCCCTCATCTGAATGGCCCCTCTCAGGGTGATATCATAGAGTAACATAGGCCTACAGTTGCAACTAACAAACTTCAAATTCCATATAATGTTTACCTCATTTGTTGTTATCAGACTATTCAAAAATCATTTGTTTCTGTGTTGACAATATCGTATCTGACTTCCCCATCACAAATGTACGCCAGGCTATTTTCCTCATGGTTATGTTTGACATCTCAGTTATtttataatgtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241971 lncRNA upstream 50349 102203671 ~ 102211768 (+) True G213066
TU241969 lncRNA upstream 62188 102199594 ~ 102199929 (+) True G213065
TU241967 lncRNA upstream 62658 102193989 ~ 102199459 (+) True G213064
TU241952 lncRNA upstream 85660 102176211 ~ 102176457 (+) True G213050
TU241892 lncRNA upstream 95361 102165327 ~ 102166756 (+) True LOC110502669
TU242007 lncRNA downstream 8630 102287513 ~ 102287787 (+) True G213102
TU242008 lncRNA downstream 9829 102288712 ~ 102289602 (+) False G213103
TU242010 lncRNA downstream 9829 102288712 ~ 102291053 (+) False G213103
TU242009 lncRNA downstream 11041 102289924 ~ 102292227 (+) True G213103
TU242011 lncRNA downstream 13987 102292870 ~ 102293088 (+) True G213104
XM_036961240.1 mRNA upstream 23857 102184359 ~ 102238260 (+) True LOC110501421
XM_036934561.1 mRNA upstream 94296 102038038 ~ 102167821 (+) False LOC110502669
XM_036961212.1 mRNA upstream 566633 101634630 ~ 101695484 (+) True LOC110516669
XM_036961196.1 mRNA upstream 890943 101345285 ~ 101371174 (+) True best1
XM_036934544.1 mRNA upstream 1297331 100929368 ~ 100964786 (+) True LOC110501031
XM_036961261.1 mRNA downstream 28614 102307497 ~ 102314434 (+) True LOC110501451
XM_036934571.1 mRNA downstream 321735 102600618 ~ 102608333 (+) True LOC118936918
XM_036961282.1 mRNA downstream 403939 102682822 ~ 102721240 (+) False slc24a1
XM_036961286.1 mRNA downstream 403939 102682822 ~ 102721240 (+) True slc24a1
XM_036961294.1 mRNA downstream 456654 102735537 ~ 102756512 (+) True LOC110501485
TU241958 other upstream 22577 102238303 ~ 102239540 (+) True G213055
TU241953 other upstream 84199 102177409 ~ 102177918 (+) True G213051
TU241742 other upstream 516143 101742899 ~ 101745974 (+) False G212863
TU241479 other upstream 705747 101554385 ~ 101556370 (+) False G212690
TU241478 other upstream 706398 101554424 ~ 101555719 (+) False G212690
TU242123 other downstream 235324 102514207 ~ 102516302 (+) True G213185
TU242175 other downstream 316648 102595531 ~ 102599866 (+) True G213221
TU242668 other downstream 400492 102679375 ~ 102680096 (+) True G213645
TU242838 other downstream 785434 103064317 ~ 103065327 (+) True G213775
TU242857 other downstream 842706 103121589 ~ 103123736 (+) False pias1b

Expression Profile