RNA id: TU116509


Basic Information

Item Value
RNA id TU116509
length 707
RNA type TUCP
GC content 0.45
exon number 3
gene id G103851
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 174996 ~ 181022 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagaaacagagacagagaaacagagaatgagagacacagagacagagagacagagaaacagagacagagaatgagagacagagagacagagaaacagagacagagaaacagagaatgagagacagagagacagagaaacagagacagagaatgagagacacagagacagagagacagagaaacagagacagagaaacagagaatgagagacacagagacagagagacagagaaacagagacagagaatgagagacacagagacagagagaaacagagaatgagagacagagaaacagagacagagaaacagagacagagagacagagaaacagagacacagagacagagagacagagaaacagagaatgagagacagagacagagaaacagagaatgagagacacagagacagagagacacagagacagagagacagagaaacagagacagagaaacagagaatgagagacacagagacagagaaacagagacagagaaacagagaatcagagacagagagacagagagaaacagagaatgggagacacagagacagagacagagagacagagaaacagagaatgagagacacagagacagagacagagagacagagaaacagagacagagaaacagagacagagaaacagagaatgagagacacagagacagagacagagagacagagaaacagagaatgagagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116471 lncRNA upstream 51714 121239 ~ 123282 (+) True G103827
TU116470 lncRNA upstream 54160 120332 ~ 120836 (+) True G103826
TU116427 lncRNA upstream 119773 54529 ~ 55223 (+) True G103790
TU116422 lncRNA upstream 125381 49272 ~ 49615 (+) True G103786
TU116413 lncRNA upstream 142404 31897 ~ 32592 (+) True G103778
TU116513 lncRNA downstream 2852 183874 ~ 184430 (+) True G103853
TU116523 lncRNA downstream 19718 200740 ~ 202233 (+) True G103862
TU116525 lncRNA downstream 23007 204029 ~ 204844 (+) True G103864
TU116531 lncRNA downstream 24041 205063 ~ 206020 (+) False G103865
TU116533 lncRNA downstream 24041 205063 ~ 206020 (+) False G103865
XM_036934821.1 mRNA upstream 156900 13864 ~ 18096 (+) True LOC118936272
XM_036934878.1 mRNA downstream 533708 714730 ~ 722393 (+) False zgc:110410
XM_036934871.1 mRNA downstream 533765 714787 ~ 722393 (+) True zgc:110410
XR_005034561.1 mRNA downstream 543769 724791 ~ 725975 (+) False LOC118937316
XM_036934927.1 mRNA downstream 679437 860459 ~ 871969 (+) False cmc1
XM_036934910.1 mRNA downstream 679437 860459 ~ 871976 (+) False cmc1
TU116869 other downstream 509024 690046 ~ 701271 (+) True G104092
TU116937 other downstream 679484 860506 ~ 872515 (+) False cmc1
TU116938 other downstream 679484 860506 ~ 872515 (+) False cmc1
TU116939 other downstream 679484 860506 ~ 872515 (+) True cmc1
TU117843 other downstream 972039 1153061 ~ 1153749 (+) True G104761

Expression Profile