RNA id: TU116531


Basic Information

Item Value
RNA id TU116531
length 425
lncRNA type intronic
GC content 0.37
exon number 3
gene id G103865
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 205063 ~ 206020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATATGTCTACCAGTGATGTAGTAAAATAGGGAGGTTGATATGATATGGCTACCAGTGATGTAGTAAAATAGGGAGGTTGATATGATATGGCTACCAGTGATGTAGTAAAATAGGGAGGTTGATATGATATGGCTACCAGTGATGTAGTAAAATAGGGAGGTTGATATGATATGTCTACCAGTGATGTAGTAAAATAGGGAGGTTGATATGATATGGCTACCAGTGATGTAGTAAAATAGGGAGGTTGATATGATATGGCTACCAGTGATGTAGTAAAATAGGGAGGTTGATATGATATGGCTATCAGTGATGTAGTAAAATAGGGAGGTTGATATGATATGTCTACCAGTGATGTAGTAAAATAGGGAGGTTCCTGGTGACAGAAGTAATGCTCTATATGTTCAAAAGGTTGATAATCACtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116525 lncRNA upstream 219 204029 ~ 204844 (+) True G103864
TU116523 lncRNA upstream 2830 200740 ~ 202233 (+) True G103862
TU116513 lncRNA upstream 20633 183874 ~ 184430 (+) True G103853
TU116442 lncRNA upstream 23403 169833 ~ 181660 (+) True G103798
TU116471 lncRNA upstream 81781 121239 ~ 123282 (+) True G103827
TU116537 lncRNA downstream 2886 208906 ~ 209707 (+) True G103867
TU116542 lncRNA downstream 14046 220066 ~ 222075 (+) False G103871
TU116544 lncRNA downstream 14046 220066 ~ 221677 (+) False G103871
TU116545 lncRNA downstream 14046 220066 ~ 221677 (+) True G103871
TU116552 lncRNA downstream 30331 236351 ~ 237556 (+) True G103878
XM_036934821.1 mRNA upstream 186967 13864 ~ 18096 (+) True LOC118936272
XM_036934878.1 mRNA downstream 508710 714730 ~ 722393 (+) False zgc:110410
XM_036934871.1 mRNA downstream 508767 714787 ~ 722393 (+) True zgc:110410
XR_005034561.1 mRNA downstream 518771 724791 ~ 725975 (+) False LOC118937316
XM_036934927.1 mRNA downstream 654439 860459 ~ 871969 (+) False cmc1
XM_036934910.1 mRNA downstream 654439 860459 ~ 871976 (+) False cmc1
TU116509 other upstream 24041 174996 ~ 181022 (+) True G103851
TU116869 other downstream 484026 690046 ~ 701271 (+) True G104092
TU116937 other downstream 654486 860506 ~ 872515 (+) False cmc1
TU116938 other downstream 654486 860506 ~ 872515 (+) False cmc1
TU116939 other downstream 654486 860506 ~ 872515 (+) True cmc1
TU117843 other downstream 947041 1153061 ~ 1153749 (+) True G104761

Expression Profile