RNA id: TU116564


Basic Information

Item Value
RNA id TU116564
length 220
lncRNA type intronic
GC content 0.39
exon number 2
gene id G103887
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 251104 ~ 253123 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatagtagtgtttcccagtcctggattatagatgtatgactgtatagtagtgtttcccagtcctgAATTATAGATGTATGACTTTATAGTAGTgtttcccagtcccagtcctGGATTATAGATGTCtgactgtatagtagtgtttcccagtcctggtcctggattatagatgtctgactgtatagtagtgtttctCAGTCCTGGATTATAGATGTATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116561 lncRNA upstream 554 249619 ~ 250550 (+) True G103886
TU116552 lncRNA upstream 13548 236351 ~ 237556 (+) True G103878
TU116542 lncRNA upstream 29029 220066 ~ 222075 (+) False G103871
TU116544 lncRNA upstream 29427 220066 ~ 221677 (+) False G103871
TU116545 lncRNA upstream 29427 220066 ~ 221677 (+) True G103871
TU116571 lncRNA downstream 13023 266146 ~ 267256 (+) True G103891
TU116573 lncRNA downstream 17902 271025 ~ 271954 (+) True G103893
TU116575 lncRNA downstream 20717 273840 ~ 275586 (+) False G103894
TU116574 lncRNA downstream 21829 274952 ~ 275586 (+) True G103894
TU116607 lncRNA downstream 77915 331038 ~ 331370 (+) True G103921
XM_036934821.1 mRNA upstream 233008 13864 ~ 18096 (+) True LOC118936272
XM_036934878.1 mRNA downstream 461607 714730 ~ 722393 (+) False zgc:110410
XM_036934871.1 mRNA downstream 461664 714787 ~ 722393 (+) True zgc:110410
XR_005034561.1 mRNA downstream 471668 724791 ~ 725975 (+) False LOC118937316
XM_036934927.1 mRNA downstream 607336 860459 ~ 871969 (+) False cmc1
XM_036934910.1 mRNA downstream 607336 860459 ~ 871976 (+) False cmc1
TU116509 other upstream 70082 174996 ~ 181022 (+) True G103851
TU116869 other downstream 436923 690046 ~ 701271 (+) True G104092
TU116937 other downstream 607383 860506 ~ 872515 (+) False cmc1
TU116938 other downstream 607383 860506 ~ 872515 (+) False cmc1
TU116939 other downstream 607383 860506 ~ 872515 (+) True cmc1
TU117843 other downstream 899938 1153061 ~ 1153749 (+) True G104761

Expression Profile