RNA id: TU116869


Basic Information

Item Value
RNA id TU116869
length 574
RNA type TUCP
GC content 0.43
exon number 3
gene id G104092
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 690046 ~ 701271 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGTATCTGTAATATAAAGCCAGTAGTGTCTGTAATATAAACCCAGTAGTATCTGTAATATAAACCCAGTAGTATCTGTAATATAAACCCAGTAGCGTCTGTAATATAAAGCCAGTAGTATCTGTAATATAAAGCCAGTAGTATCTGTGATTTAAAGACAGTAGTACATTTGATGCCTCCAATTTTGATGCCTCTTTGATGTATATTTGAtgcttccaactgctcttaaatacaagtaaaactaaatgcatgctcttcaaccgatcgctgcccgcacctgcccgcccgtccagcataactactctggacggctctgacttagaatatgtggacaactacaaatacctaggtgtctggctagactctaaactctccttccagacccatatcaaacatctccaatcgaaaatcaaatcaagagtgggctttctattccgcaacaaagcctccttcactcacgccgccaaacttaccctagtaaaactgactatcctaccgatcctcgacttcggcgatgtcatctacaaaattgcttccaacactctactcagcaaactggatgcagtttatcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116867 lncRNA upstream 140 689586 ~ 689906 (+) True G104091
TU116485 lncRNA upstream 13671 676014 ~ 676375 (+) True G103840
TU116832 lncRNA upstream 46552 640776 ~ 643494 (+) True G104072
TU116818 lncRNA upstream 56707 632774 ~ 633339 (+) True G104067
TU116809 lncRNA upstream 71193 618307 ~ 618853 (+) True G104060
TU116851 lncRNA downstream 24390 725661 ~ 731551 (+) True LOC118937316
TU116885 lncRNA downstream 39691 740962 ~ 741553 (+) False G104106
TU116886 lncRNA downstream 39691 740962 ~ 741553 (+) True G104106
TU116892 lncRNA downstream 45125 746396 ~ 748276 (+) True G104111
TU116895 lncRNA downstream 52428 753699 ~ 754328 (+) True G104114
XM_036934833.1 mRNA upstream 17852 149182 ~ 672194 (+) True LOC110512917
XM_036934821.1 mRNA upstream 671950 13864 ~ 18096 (+) True LOC118936272
XM_036934878.1 mRNA downstream 13459 714730 ~ 722393 (+) False zgc:110410
XM_036934871.1 mRNA downstream 13516 714787 ~ 722393 (+) True zgc:110410
XR_005034561.1 mRNA downstream 23520 724791 ~ 725975 (+) False LOC118937316
XM_036934927.1 mRNA downstream 159188 860459 ~ 871969 (+) False cmc1
XM_036934910.1 mRNA downstream 159188 860459 ~ 871976 (+) False cmc1
TU116509 other upstream 509024 174996 ~ 181022 (+) True G103851
TU116937 other downstream 159235 860506 ~ 872515 (+) False cmc1
TU116938 other downstream 159235 860506 ~ 872515 (+) False cmc1
TU116939 other downstream 159235 860506 ~ 872515 (+) True cmc1
TU117843 other downstream 451790 1153061 ~ 1153749 (+) True G104761
TU118057 other downstream 608007 1309278 ~ 1352863 (+) True tgfbr2b

Expression Profile