RNA id: TU116885


Basic Information

Item Value
RNA id TU116885
length 329
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G104106
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 740962 ~ 741553 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTTGTTCTGCTCCTCCACCTGGTTGATGACCTCATAGCGGGTACAGCGGTAGTAACCTCCAGTAGACGAGCTGTGTTTCttccattcctccagacagatcCAGCAGAAGTCATACTTACactgcagagaggcagagagggaagaggagGTAGTCAGTCAGTAGCAGGACATACCAAGGCCCTAACCTCTGGCAAGACTAAAGGTCAGTAGCAGGAAATACCAAGGCCCTAACCTCTGGTATGACTAAAGGTAGTCAGTCAGTAGCAGGAAATACCAAGGCCCTAACCTCTGGCATGGCTAAAGGTAGTCAGTCAGTAGCAGGAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116851 lncRNA upstream 9411 725661 ~ 731551 (+) True LOC118937316
TU116881 lncRNA upstream 38611 699871 ~ 702351 (+) True G104102
TU116867 lncRNA upstream 51056 689586 ~ 689906 (+) True G104091
TU116485 lncRNA upstream 64587 676014 ~ 676375 (+) True G103840
TU116832 lncRNA upstream 97468 640776 ~ 643494 (+) True G104072
TU116892 lncRNA downstream 4843 746396 ~ 748276 (+) True G104111
TU116895 lncRNA downstream 12146 753699 ~ 754328 (+) True G104114
TU116897 lncRNA downstream 15233 756786 ~ 757552 (+) False G104116
TU116899 lncRNA downstream 15233 756786 ~ 757552 (+) False G104116
TU116900 lncRNA downstream 15233 756786 ~ 757552 (+) False G104116
XR_005034561.1 mRNA upstream 14987 724791 ~ 725975 (+) False LOC118937316
XM_036934878.1 mRNA upstream 18569 714730 ~ 722393 (+) False zgc:110410
XM_036934871.1 mRNA upstream 18569 714787 ~ 722393 (+) True zgc:110410
XM_036934833.1 mRNA upstream 68768 149182 ~ 672194 (+) True LOC110512917
XM_036934821.1 mRNA upstream 722866 13864 ~ 18096 (+) True LOC118936272
XM_036934927.1 mRNA downstream 118906 860459 ~ 871969 (+) False cmc1
XM_036934910.1 mRNA downstream 118906 860459 ~ 871976 (+) False cmc1
XR_005034563.1 mRNA downstream 118906 860459 ~ 872514 (+) False cmc1
XM_036934922.1 mRNA downstream 119248 860801 ~ 871977 (+) False cmc1
XM_036934929.1 mRNA downstream 119327 860880 ~ 871969 (+) False cmc1
TU116869 other upstream 39691 690046 ~ 701271 (+) True G104092
TU116509 other upstream 559940 174996 ~ 181022 (+) True G103851
TU116937 other downstream 118953 860506 ~ 872515 (+) False cmc1
TU116938 other downstream 118953 860506 ~ 872515 (+) False cmc1
TU116939 other downstream 118953 860506 ~ 872515 (+) True cmc1
TU117843 other downstream 411508 1153061 ~ 1153749 (+) True G104761
TU118057 other downstream 567725 1309278 ~ 1352863 (+) True tgfbr2b

Expression Profile