RNA id: TU117000


Basic Information

Item Value
RNA id TU117000
length 305
lncRNA type intronic
GC content 0.55
exon number 2
gene id G104179
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 886962 ~ 897406 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtacagagtcaggggtaccaggtagtaatgagactataaggagtaccagtacagagtcaggggtaccaggtagtaatgagactataaggagtaccagtacagagtcaggggtaccaggtagtaatgagactataaggagtaccatacagagtcaggggtaccaggtagtaatgagactataaggagtaccatacagagtcaggggtagcaggtagttgaggtaatatgtacatgtaggtggaggTGAAAGTGTCTTGTCAATCAGGAgacaataaacagagtagcagcaacgtGAAGAGTGTga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116998 lncRNA upstream 291 886962 ~ 896760 (+) False G104179
TU116997 lncRNA upstream 291 894438 ~ 896760 (+) False G104179
TU116941 lncRNA upstream 18387 878059 ~ 878664 (+) True G104138
TU116924 lncRNA upstream 117321 778189 ~ 779730 (+) True G104128
TU116903 lncRNA upstream 139280 756786 ~ 757771 (+) True G104116
TU117002 lncRNA downstream 11652 909058 ~ 911619 (+) True G104181
TU117004 lncRNA downstream 14387 911793 ~ 912016 (+) True G104183
TU117005 lncRNA downstream 15187 912593 ~ 912844 (+) True G104184
TU117006 lncRNA downstream 16777 914183 ~ 914388 (+) True G104185
TU117007 lncRNA downstream 17332 914738 ~ 915183 (+) True G104186
XR_005034563.1 mRNA upstream 24537 860459 ~ 872514 (+) False cmc1
XM_036934922.1 mRNA upstream 25074 860801 ~ 871977 (+) False cmc1
XM_036934910.1 mRNA upstream 25075 860459 ~ 871976 (+) False cmc1
XM_036934927.1 mRNA upstream 25082 860459 ~ 871969 (+) False cmc1
XM_036934929.1 mRNA upstream 25082 860880 ~ 871969 (+) False cmc1
XM_036934970.1 mRNA downstream 8170 905576 ~ 908576 (+) False LOC110506977
XM_021586856.2 mRNA downstream 8178 905584 ~ 908460 (+) False LOC110506977
XM_036934948.1 mRNA downstream 8188 905594 ~ 908576 (+) False LOC110506977
XM_021586864.2 mRNA downstream 8212 905618 ~ 908460 (+) True LOC110506977
XM_036934572.1 mRNA downstream 71210 968616 ~ 969528 (+) True LOC118936923
TU116937 other upstream 24536 860506 ~ 872515 (+) False cmc1
TU116938 other upstream 24536 860506 ~ 872515 (+) False cmc1
TU116939 other upstream 24536 860506 ~ 872515 (+) True cmc1
TU116869 other upstream 195780 690046 ~ 701271 (+) True G104092
TU116509 other upstream 716029 174996 ~ 181022 (+) True G103851
TU117843 other downstream 255655 1153061 ~ 1153749 (+) True G104761
TU118057 other downstream 411872 1309278 ~ 1352863 (+) True tgfbr2b
TU118276 other downstream 801667 1699073 ~ 1700431 (+) True G105036
TU118283 other downstream 811563 1708969 ~ 1710557 (+) True G105042
TU119728 other downstream 1623310 2520716 ~ 2527972 (+) True G106019

Expression Profile