RNA id: TU117005


Basic Information

Item Value
RNA id TU117005
length 252
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G104184
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 912593 ~ 912844 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctccactggtcctgggatccttgttaaggtcaacggcatcatgaactttacccagaaCCAGGACATTTTAGATAAAAACCTAGTTGTCTCTGCCAGGAGACTGACACTTGGCCACAAGTGGACCTTCCAGCAAGAcgataaccccaagcacacattaacatccacaaagaaatggttaattgaccacaaaatcaagtCTCCGAACTTTAAACATATTGAAAACCTGTGGTGTGAATTGAAGAGAGCCAGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117004 lncRNA upstream 577 911793 ~ 912016 (+) True G104183
TU117002 lncRNA upstream 974 909058 ~ 911619 (+) True G104181
TU116999 lncRNA upstream 15187 886962 ~ 897406 (+) False G104179
TU117000 lncRNA upstream 15187 897051 ~ 897406 (+) True G104179
TU116998 lncRNA upstream 15833 886962 ~ 896760 (+) False G104179
TU117006 lncRNA downstream 1339 914183 ~ 914388 (+) True G104185
TU117007 lncRNA downstream 1894 914738 ~ 915183 (+) True G104186
TU117011 lncRNA downstream 3836 916680 ~ 916989 (+) False G104187
TU117009 lncRNA downstream 3919 916763 ~ 917640 (+) False G104187
TU117010 lncRNA downstream 3919 916763 ~ 917086 (+) True G104187
XM_036934970.1 mRNA upstream 4017 905576 ~ 908576 (+) False LOC110506977
XM_036934948.1 mRNA upstream 4017 905594 ~ 908576 (+) False LOC110506977
XM_021586856.2 mRNA upstream 4133 905584 ~ 908460 (+) False LOC110506977
XM_021586864.2 mRNA upstream 4133 905618 ~ 908460 (+) True LOC110506977
XM_036934922.1 mRNA upstream 40616 860801 ~ 871977 (+) False cmc1
XM_036934572.1 mRNA downstream 55772 968616 ~ 969528 (+) True LOC118936923
XM_036934979.1 mRNA downstream 110617 1023461 ~ 1231535 (+) True rbms3
XM_021594101.2 mRNA downstream 309286 1222130 ~ 1224904 (+) True LOC110515032
XM_036934986.1 mRNA downstream 396358 1309202 ~ 1390936 (+) False tgfbr2b
XR_005034581.1 mRNA downstream 511472 1424316 ~ 1426277 (+) False LOC118937323
TU116937 other upstream 40078 860506 ~ 872515 (+) False cmc1
TU116938 other upstream 40078 860506 ~ 872515 (+) False cmc1
TU116939 other upstream 40078 860506 ~ 872515 (+) True cmc1
TU116869 other upstream 211322 690046 ~ 701271 (+) True G104092
TU116509 other upstream 731571 174996 ~ 181022 (+) True G103851
TU117843 other downstream 240217 1153061 ~ 1153749 (+) True G104761
TU118057 other downstream 396434 1309278 ~ 1352863 (+) True tgfbr2b
TU118276 other downstream 786229 1699073 ~ 1700431 (+) True G105036
TU118283 other downstream 796125 1708969 ~ 1710557 (+) True G105042
TU119728 other downstream 1607872 2520716 ~ 2527972 (+) True G106019

Expression Profile