RNA id: TU117011


Basic Information

Item Value
RNA id TU117011
length 201
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G104187
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 916680 ~ 917640 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTTATATCCCTGAAGGGGAATTAGTAGAATCTCCCATCCAACCTGCTGATTGAAGAAGGACGAGCTCTACGATCTGATACTGCTTTAATAAACCACTACACAGTTCTGCTTTATATCCCTGAAGGGGAATTAGTAGAATCTCCCATCCAACCCGCTGTTTGAAGAAGGACGAGCTCTACGATCTGATACTGCTTTAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117007 lncRNA upstream 1497 914738 ~ 915183 (+) True G104186
TU117006 lncRNA upstream 2292 914183 ~ 914388 (+) True G104185
TU117005 lncRNA upstream 3836 912593 ~ 912844 (+) True G104184
TU117004 lncRNA upstream 4664 911793 ~ 912016 (+) True G104183
TU117002 lncRNA upstream 5061 909058 ~ 911619 (+) True G104181
TU117016 lncRNA downstream 9048 926037 ~ 926363 (+) True G104192
TU117679 lncRNA downstream 17605 934594 ~ 934798 (+) True G104640
TU117686 lncRNA downstream 27277 944266 ~ 944470 (+) True G104647
TU117694 lncRNA downstream 35918 952907 ~ 953167 (+) True G104654
TU117703 lncRNA downstream 48468 965457 ~ 965657 (+) True G104663
XM_036934970.1 mRNA upstream 8104 905576 ~ 908576 (+) False LOC110506977
XM_036934948.1 mRNA upstream 8104 905594 ~ 908576 (+) False LOC110506977
XM_021586856.2 mRNA upstream 8220 905584 ~ 908460 (+) False LOC110506977
XM_021586864.2 mRNA upstream 8220 905618 ~ 908460 (+) True LOC110506977
XM_036934922.1 mRNA upstream 44703 860801 ~ 871977 (+) False cmc1
XM_036934572.1 mRNA downstream 51627 968616 ~ 969528 (+) True LOC118936923
XM_036934979.1 mRNA downstream 106472 1023461 ~ 1231535 (+) True rbms3
XM_021594101.2 mRNA downstream 305141 1222130 ~ 1224904 (+) True LOC110515032
XM_036934986.1 mRNA downstream 392213 1309202 ~ 1390936 (+) False tgfbr2b
XR_005034581.1 mRNA downstream 507327 1424316 ~ 1426277 (+) False LOC118937323
TU116937 other upstream 44165 860506 ~ 872515 (+) False cmc1
TU116938 other upstream 44165 860506 ~ 872515 (+) False cmc1
TU116939 other upstream 44165 860506 ~ 872515 (+) True cmc1
TU116869 other upstream 215409 690046 ~ 701271 (+) True G104092
TU116509 other upstream 735658 174996 ~ 181022 (+) True G103851
TU117843 other downstream 236072 1153061 ~ 1153749 (+) True G104761
TU118057 other downstream 392289 1309278 ~ 1352863 (+) True tgfbr2b
TU118276 other downstream 782084 1699073 ~ 1700431 (+) True G105036
TU118283 other downstream 791980 1708969 ~ 1710557 (+) True G105042
TU119728 other downstream 1603727 2520716 ~ 2527972 (+) True G106019

Expression Profile