RNA id: TU117726


Basic Information

Item Value
RNA id TU117726
length 273
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G104674
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 979419 ~ 979691 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcccatccaagaaggctcaaggtcattggccgcggataaaatgacgtcaaatcacgttatatgtactgtagctttgattggactgatcatgtcaacatcatactttcacaatcttagctagcaagctagcagtcatcgtcatgaatcaagtcgacaatttattggcaaatccttttcaatccttgtcatatgaagagaaataatgaagagaaatgacAAAATAAAAGGTAACGCTGCTCATCGGCCGTAGGACATAAACATACAACAAgtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117703 lncRNA upstream 13762 965457 ~ 965657 (+) True G104663
TU117694 lncRNA upstream 26252 952907 ~ 953167 (+) True G104654
TU117686 lncRNA upstream 34949 944266 ~ 944470 (+) True G104647
TU117679 lncRNA upstream 44621 934594 ~ 934798 (+) True G104640
TU117016 lncRNA upstream 53056 926037 ~ 926363 (+) True G104192
TU117728 lncRNA downstream 1899 981590 ~ 981815 (+) True G104676
TU117729 lncRNA downstream 2235 981926 ~ 982173 (+) True G104677
TU117733 lncRNA downstream 6571 986262 ~ 986628 (+) True G104681
TU117736 lncRNA downstream 12774 992465 ~ 992671 (+) True G104684
TU117737 lncRNA downstream 13910 993601 ~ 993900 (+) True G104685
XM_036934572.1 mRNA upstream 9891 968616 ~ 969528 (+) True LOC118936923
XM_036934970.1 mRNA upstream 70843 905576 ~ 908576 (+) False LOC110506977
XM_036934948.1 mRNA upstream 70843 905594 ~ 908576 (+) False LOC110506977
XM_021586856.2 mRNA upstream 70959 905584 ~ 908460 (+) False LOC110506977
XM_021586864.2 mRNA upstream 70959 905618 ~ 908460 (+) True LOC110506977
XM_036934979.1 mRNA downstream 43770 1023461 ~ 1231535 (+) True rbms3
XM_021594101.2 mRNA downstream 242439 1222130 ~ 1224904 (+) True LOC110515032
XM_036934986.1 mRNA downstream 329511 1309202 ~ 1390936 (+) False tgfbr2b
XR_005034581.1 mRNA downstream 444625 1424316 ~ 1426277 (+) False LOC118937323
XR_005034582.1 mRNA downstream 444625 1424316 ~ 1426277 (+) False LOC118937323
TU116937 other upstream 106904 860506 ~ 872515 (+) False cmc1
TU116938 other upstream 106904 860506 ~ 872515 (+) False cmc1
TU116939 other upstream 106904 860506 ~ 872515 (+) True cmc1
TU116869 other upstream 278148 690046 ~ 701271 (+) True G104092
TU116509 other upstream 798397 174996 ~ 181022 (+) True G103851
TU117843 other downstream 173370 1153061 ~ 1153749 (+) True G104761
TU118057 other downstream 329587 1309278 ~ 1352863 (+) True tgfbr2b
TU118276 other downstream 719382 1699073 ~ 1700431 (+) True G105036
TU118283 other downstream 729278 1708969 ~ 1710557 (+) True G105042
TU119728 other downstream 1541025 2520716 ~ 2527972 (+) True G106019

Expression Profile