RNA id: TU117737


Basic Information

Item Value
RNA id TU117737
length 300
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G104685
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 993601 ~ 993900 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCATGTGTTCTCTCCTGTGTtctctcctgtgttctctctgtgttctctcctgtgttctctcctgtgttctctctgtgttctctcctgtgttctctcctgtgttctctcctgtgttctctcctgttttctctcctGTGTTCTCTCATGTGTTCTCTCCTGTGTTCTCTCCTGTGTTCTCTCCTGTGTTCTCTCATGTGTTCTCTCCTGTGTTAGACACCTGACAACTTTGTTTAAGCTCCTCAGTTTAATGTCAGTCTAGTGACATATACAGGTTCTCTTCCTCTGGCCTGTACCCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117736 lncRNA upstream 930 992465 ~ 992671 (+) True G104684
TU117733 lncRNA upstream 6973 986262 ~ 986628 (+) True G104681
TU117729 lncRNA upstream 11428 981926 ~ 982173 (+) True G104677
TU117728 lncRNA upstream 11786 981590 ~ 981815 (+) True G104676
TU117726 lncRNA upstream 13910 979419 ~ 979691 (+) True G104674
TU117743 lncRNA downstream 14979 1008879 ~ 1009114 (+) True G104690
TU117772 lncRNA downstream 33731 1027631 ~ 1028148 (+) True G104711
TU117778 lncRNA downstream 38144 1032044 ~ 1034766 (+) False G104716
TU117777 lncRNA downstream 39685 1033585 ~ 1034766 (+) True G104716
TU117786 lncRNA downstream 53686 1047586 ~ 1048146 (+) False G104722
XM_036934572.1 mRNA upstream 24073 968616 ~ 969528 (+) True LOC118936923
XM_036934970.1 mRNA upstream 85025 905576 ~ 908576 (+) False LOC110506977
XM_036934979.1 mRNA downstream 29561 1023461 ~ 1231535 (+) True rbms3
XM_021594101.2 mRNA downstream 228230 1222130 ~ 1224904 (+) True LOC110515032
XM_036934986.1 mRNA downstream 315302 1309202 ~ 1390936 (+) False tgfbr2b
XR_005034581.1 mRNA downstream 430416 1424316 ~ 1426277 (+) False LOC118937323
XR_005034582.1 mRNA downstream 430416 1424316 ~ 1426277 (+) False LOC118937323
TU116937 other upstream 121086 860506 ~ 872515 (+) False cmc1
TU116938 other upstream 121086 860506 ~ 872515 (+) False cmc1
TU116939 other upstream 121086 860506 ~ 872515 (+) True cmc1
TU116869 other upstream 292330 690046 ~ 701271 (+) True G104092
TU116509 other upstream 812579 174996 ~ 181022 (+) True G103851
TU117843 other downstream 159161 1153061 ~ 1153749 (+) True G104761
TU118057 other downstream 315378 1309278 ~ 1352863 (+) True tgfbr2b
TU118276 other downstream 705173 1699073 ~ 1700431 (+) True G105036
TU118283 other downstream 715069 1708969 ~ 1710557 (+) True G105042
TU119728 other downstream 1526816 2520716 ~ 2527972 (+) True G106019

Expression Profile