RNA id: TU117743


Basic Information

Item Value
RNA id TU117743
length 236
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G104690
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1008879 ~ 1009114 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagtgagacagcttgatgtaccaggacaccccctggacaggacactagtctatctcctgttactgtagtgagacagcttgatgtaccaggacaccccctggacaggacactagtctatcccCTGTTtctgatgtacaggacacccctggacaggacactagtctatctcctgttactgtagtgtgagacagcttgatgtaccaggacaccccctggacaggacactagtctatctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117737 lncRNA upstream 14979 993601 ~ 993900 (+) True G104685
TU117736 lncRNA upstream 16208 992465 ~ 992671 (+) True G104684
TU117733 lncRNA upstream 22251 986262 ~ 986628 (+) True G104681
TU117729 lncRNA upstream 26706 981926 ~ 982173 (+) True G104677
TU117728 lncRNA upstream 27064 981590 ~ 981815 (+) True G104676
TU117772 lncRNA downstream 18517 1027631 ~ 1028148 (+) True G104711
TU117778 lncRNA downstream 22930 1032044 ~ 1034766 (+) False G104716
TU117777 lncRNA downstream 24471 1033585 ~ 1034766 (+) True G104716
TU117786 lncRNA downstream 38472 1047586 ~ 1048146 (+) False G104722
TU117787 lncRNA downstream 38472 1047586 ~ 1048146 (+) True G104722
XM_036934572.1 mRNA upstream 39351 968616 ~ 969528 (+) True LOC118936923
XM_036934970.1 mRNA upstream 100303 905576 ~ 908576 (+) False LOC110506977
XM_036934979.1 mRNA downstream 14347 1023461 ~ 1231535 (+) True rbms3
XM_021594101.2 mRNA downstream 213016 1222130 ~ 1224904 (+) True LOC110515032
XM_036934986.1 mRNA downstream 300088 1309202 ~ 1390936 (+) False tgfbr2b
XR_005034581.1 mRNA downstream 415202 1424316 ~ 1426277 (+) False LOC118937323
XR_005034582.1 mRNA downstream 415202 1424316 ~ 1426277 (+) False LOC118937323
TU116937 other upstream 136364 860506 ~ 872515 (+) False cmc1
TU116938 other upstream 136364 860506 ~ 872515 (+) False cmc1
TU116939 other upstream 136364 860506 ~ 872515 (+) True cmc1
TU116869 other upstream 307608 690046 ~ 701271 (+) True G104092
TU116509 other upstream 827857 174996 ~ 181022 (+) True G103851
TU117843 other downstream 143947 1153061 ~ 1153749 (+) True G104761
TU118057 other downstream 300164 1309278 ~ 1352863 (+) True tgfbr2b
TU118276 other downstream 689959 1699073 ~ 1700431 (+) True G105036
TU118283 other downstream 699855 1708969 ~ 1710557 (+) True G105042
TU119728 other downstream 1511602 2520716 ~ 2527972 (+) True G106019

Expression Profile