RNA id: TU117835


Basic Information

Item Value
RNA id TU117835
length 257
lncRNA type intronic
GC content 0.47
exon number 2
gene id G104756
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1139191 ~ 1139974 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTGTCCTGGGATATTAACAACCAAAAGGTCTTTACCTGTCCTGGGATATTAACAACCAAAAGGAGAGAGACTTTTAGATGACTTCAAGACCATCAAACTTTGGAGTGGAGCTGGTCAACAATCACCCGGAAGTCATCGCTGAGAACCTTCAATCACTCGGAAGGGATCGCTGAGAACCCACAATCACTCAGAAGTGATCGCTGAGAACCCACAATCACCCAGAAGTGATCGCTGAGAACCCAGAATCACCCGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117820 lncRNA upstream 28118 1110177 ~ 1111073 (+) True G104746
TU117798 lncRNA upstream 71972 1066580 ~ 1067219 (+) False G104730
TU117799 lncRNA upstream 71972 1066580 ~ 1067219 (+) False G104730
TU117800 lncRNA upstream 71972 1066580 ~ 1067219 (+) False G104730
TU117801 lncRNA upstream 71972 1066580 ~ 1067219 (+) True G104730
TU117854 lncRNA downstream 32434 1172408 ~ 1173528 (+) False G104770
TU117852 lncRNA downstream 32994 1172968 ~ 1173349 (+) True G104770
TU117855 lncRNA downstream 33681 1173655 ~ 1174059 (+) True G104771
TU117865 lncRNA downstream 42362 1182336 ~ 1183718 (+) True G104776
TU117758 lncRNA downstream 93551 1233525 ~ 1234133 (+) True G104702
XM_036934572.1 mRNA upstream 169663 968616 ~ 969528 (+) True LOC118936923
XM_036934970.1 mRNA upstream 230615 905576 ~ 908576 (+) False LOC110506977
XM_021594101.2 mRNA downstream 82156 1222130 ~ 1224904 (+) True LOC110515032
XM_036934986.1 mRNA downstream 169228 1309202 ~ 1390936 (+) False tgfbr2b
XR_005034581.1 mRNA downstream 284342 1424316 ~ 1426277 (+) False LOC118937323
XR_005034582.1 mRNA downstream 284342 1424316 ~ 1426277 (+) False LOC118937323
XM_036935010.1 mRNA downstream 316362 1456336 ~ 1564305 (+) False stt3b
TU116937 other upstream 266676 860506 ~ 872515 (+) False cmc1
TU116938 other upstream 266676 860506 ~ 872515 (+) False cmc1
TU116939 other upstream 266676 860506 ~ 872515 (+) True cmc1
TU116869 other upstream 437920 690046 ~ 701271 (+) True G104092
TU116509 other upstream 958169 174996 ~ 181022 (+) True G103851
TU117843 other downstream 13087 1153061 ~ 1153749 (+) True G104761
TU118057 other downstream 169304 1309278 ~ 1352863 (+) True tgfbr2b
TU118276 other downstream 559099 1699073 ~ 1700431 (+) True G105036
TU118283 other downstream 568995 1708969 ~ 1710557 (+) True G105042
TU119728 other downstream 1380742 2520716 ~ 2527972 (+) True G106019

Expression Profile