RNA id: TU117852


Basic Information

Item Value
RNA id TU117852
length 332
lncRNA type intronic
GC content 0.41
exon number 2
gene id G104770
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1172408 ~ 1173528 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaccagagccctattccctatatcgtgcactactcttgaccagagccctattccctatatcgtgcactactcttgaccagagccctattccctatatagtgcactactcttgaccagagccctactccctatatagtgcactactcttgaccagaggtCTATGGGGAATATTTGGGACTCAATTGCTTGTCTTCAGCATTGCATGGTGGTCTTTTACCAAAGTGGCTTGTTCCATTATTCTCCTCAGAGGTGATTTAGTTCAATTATGACAGAGATGATTTAGCTCTATGATGACAGAGATGATTTAGCTCTATGATGACAGAGATGAttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117835 lncRNA upstream 32994 1139191 ~ 1139974 (+) True G104756
TU117820 lncRNA upstream 61895 1110177 ~ 1111073 (+) True G104746
TU117799 lncRNA upstream 105749 1066580 ~ 1067219 (+) False G104730
TU117855 lncRNA downstream 306 1173655 ~ 1174059 (+) True G104771
TU117865 lncRNA downstream 8987 1182336 ~ 1183718 (+) True G104776
TU117758 lncRNA downstream 60176 1233525 ~ 1234133 (+) True G104702
TU117880 lncRNA downstream 76872 1250221 ~ 1252467 (+) True G104789
TU117889 lncRNA downstream 93107 1266456 ~ 1267051 (+) False G104798
XM_036934572.1 mRNA upstream 203440 968616 ~ 969528 (+) True LOC118936923
XM_036934970.1 mRNA upstream 264392 905576 ~ 908576 (+) False LOC110506977
XM_021594101.2 mRNA downstream 48781 1222130 ~ 1224904 (+) True LOC110515032
XM_036934986.1 mRNA downstream 135853 1309202 ~ 1390936 (+) False tgfbr2b
XR_005034581.1 mRNA downstream 250967 1424316 ~ 1426277 (+) False LOC118937323
XR_005034582.1 mRNA downstream 250967 1424316 ~ 1426277 (+) False LOC118937323
XM_036935010.1 mRNA downstream 282987 1456336 ~ 1564305 (+) False stt3b
TU117843 other upstream 19219 1153061 ~ 1153749 (+) True G104761
TU116937 other upstream 300453 860506 ~ 872515 (+) False cmc1
TU116938 other upstream 300453 860506 ~ 872515 (+) False cmc1
TU116939 other upstream 300453 860506 ~ 872515 (+) True cmc1
TU116869 other upstream 471697 690046 ~ 701271 (+) True G104092
TU118057 other downstream 135929 1309278 ~ 1352863 (+) True tgfbr2b
TU118276 other downstream 525724 1699073 ~ 1700431 (+) True G105036
TU118283 other downstream 535620 1708969 ~ 1710557 (+) True G105042
TU119728 other downstream 1347367 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 1544612 2717961 ~ 2718525 (+) True G106122

Expression Profile