RNA id: TU118029


Basic Information

Item Value
RNA id TU118029
length 1406
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G104878
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1233007 ~ 1234595 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTATGTAGAGTCAGGTCAGGTGGGCAGATTTACAAGGTGTGAGCTCAGCACAGATAGCCAATCAGACTCCTTGGTGGTACTGTAATCAGCCAATCAGACTCCTTGGTGGTACTGCAATCAGCCAATCAGCCTCCTTGGTGGTGCTGTAATCAGaattgtactgtaatgtatacaGTACAGTTATCACGAGGCTAGATCTTGGTTATACCATTGTTGAAACTATAAGCCTCGAGAAGCCTCGAGATGGCTCTAAAACAACTTcaaacccccccctccccagtcagctgactggctgactgactggctgattggctgactggctcCCCAATACTGAACACTTGTGTAGCAGCTAAAACATTAAAGTCAATTCTCAAATAATTGCAgcacattttaaaaaaattatgTTTTACTTTTCTTTTTTCCTCTCTAAGACAAGATAGCTGAAGATGATCAGATAAGCAACCAGAAACTAGCATGGTGTCTTTGTCTCAGACAAGATAGCTGAACATGATCAGATAAGTAACCAGAAACTAGCATGGTGTCTTTGTCTCAGACAAGATAGCTGAAGATGATCAGATAAGTAACCAGAAACTAGCATGGTGTCTTTGTCTCAGACAAGATAGCTGAAGATGATCAGATAAGCTACCAGAAACTAGCATGGTGTCTTTGTCTCAGACAAGATAGCTGAAGATGATCAGATAAGCAACCAGAAACTAGCATGATGTCTTTGTCTCAGACAAGATAGCTGAAGATGATCAGATAAGCAACCAGAAACTAGCATGGTGTCTTTGTCTAAGACAAGATAGCTGAAGATGATCAGATAAGCAACCAGAAACTAGCATGGTGTCTTTGTCTCAGACAAGATAGCTGAAGATGATCAGATAAGTAACCAGAAACTAGCATGATGTCTTTGTCTCAGACAAGATAGCTAAAGATGGTCAGATAAGCAACCAGAAACTAGCATGATGTCTTTGTCTCAGACAAGATAGCTAAAGATGGTCAGATAAGCAACCAGAAACTAGCATGATGTCTTTGTCTCAGACAAGATAGCTAAAGATGACTAGATAAGCAACCAGAAACTAGCATGATGTCTTTGTCTCAGACAAGATAGCTAAAGACGACTAGATAAGCAACCAGAAACTAGCATGATGTCTTTGTCTCAGACAAGATAGCTAAAGATGACTAGATAAGCAACCAGAAACTAGCATGATGTCTTTGTCTCTGACAAGATAGCTAAAGATGACTAGATAAGCTACCAGAAACTAGCATGATGTCTTTGTCTCAGACAAGATAGCTGAAGATGATCAGATAAGTAACCAGAAACTAGCATGGTGTCTTTGTCTCAGACAAGATAGCTGAAGATGATCAGATAAGCAACCAGAAACTAGCATGATGTCTTTGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118026 lncRNA downstream 2248 1229754 ~ 1230759 (-) True G104877
TU118017 lncRNA downstream 15367 1216951 ~ 1217640 (-) True G104872
TU118016 lncRNA downstream 20654 1211036 ~ 1212353 (-) True G104871
TU118015 lncRNA downstream 22602 1208686 ~ 1210405 (-) True G104870
TU118006 lncRNA downstream 58229 1173334 ~ 1174778 (-) True G104863
TU118009 lncRNA upstream 14868 1249463 ~ 1249910 (-) True G104865
TU118041 lncRNA upstream 18174 1252769 ~ 1254053 (-) True G104887
TU118045 lncRNA upstream 23212 1257807 ~ 1258074 (-) True G104890
TU118047 lncRNA upstream 29832 1264427 ~ 1265429 (-) True G104892
TU118054 lncRNA upstream 43061 1277656 ~ 1278166 (-) True G104898
XM_036934934.1 mRNA downstream 327589 879818 ~ 905418 (-) True azi2
XM_036934936.1 mRNA downstream 327592 879818 ~ 905415 (-) False azi2
NM_001281390.1 mRNA downstream 419817 806150 ~ 813190 (-) True eomesb
XM_036934898.1 mRNA downstream 442136 727654 ~ 790871 (-) False LOC110516483
XR_005034579.1 mRNA upstream 81069 1315664 ~ 1316080 (-) False LOC118937319
XR_005034578.1 mRNA upstream 81069 1315664 ~ 1316245 (-) False LOC118937319
XM_036935016.1 mRNA upstream 192656 1427251 ~ 1457133 (-) True LOC110515934
XM_036935030.1 mRNA upstream 338807 1573402 ~ 1683489 (-) False LOC110515405
XM_021593425.2 mRNA upstream 468356 1702951 ~ 1704863 (-) True kiaa1143
TU118548 other upstream 99391 1333986 ~ 1342335 (-) False G105220
TU118550 other upstream 99391 1333986 ~ 1342335 (-) False G105220
TU118552 other upstream 99391 1333986 ~ 1342335 (-) True G105220
TU118668 other upstream 306135 1540730 ~ 1541706 (-) True G105285
TU118629 other upstream 359186 1593781 ~ 1619036 (-) False LOC110515405

Expression Profile