RNA id: TU117889


Basic Information

Item Value
RNA id TU117889
length 248
lncRNA type inter_gene
GC content 0.53
exon number 3
gene id G104798
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1266456 ~ 1267051 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTGAGGTATCTGGGAGTTTAGATGTGTTGAGTCTGAGGTATCTGGGAGTTTAGATGTGTTGAGTCTGAGGTATCTGAGAGTATAGATGTGTTGAGCCTGAGGTATCTGGGAGTTTAGATGTGTTGAGTCTGAGGTATCTGAGAGTATAGATGTGTTGTGTTTTGAGTCTGAGGTATCTGGGAGTTTAGATGGGTTGTTTGTTGAGCTGGAGTTATCTGGGAGCCATAAAATATAATTTTAGCCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117880 lncRNA upstream 13989 1250221 ~ 1252467 (+) True G104789
TU117758 lncRNA upstream 32323 1233525 ~ 1234133 (+) True G104702
TU117865 lncRNA upstream 82738 1182336 ~ 1183718 (+) True G104776
TU117855 lncRNA upstream 92397 1173655 ~ 1174059 (+) True G104771
TU117854 lncRNA upstream 92928 1172408 ~ 1173528 (+) False G104770
TU118050 lncRNA downstream 5046 1272097 ~ 1272610 (+) True G104894
TU118052 lncRNA downstream 8981 1276032 ~ 1276273 (+) True G104896
TU118084 lncRNA downstream 35377 1302428 ~ 1303051 (+) True G104911
TU118085 lncRNA downstream 36585 1303636 ~ 1303911 (+) True G104912
TU118086 lncRNA downstream 38193 1305244 ~ 1305543 (+) True G104913
XM_036934979.1 mRNA upstream 34921 1023461 ~ 1231535 (+) True rbms3
XM_021594101.2 mRNA upstream 41552 1222130 ~ 1224904 (+) True LOC110515032
XM_036934572.1 mRNA upstream 296928 968616 ~ 969528 (+) True LOC118936923
XM_036934948.1 mRNA upstream 357880 905594 ~ 908576 (+) False LOC110506977
XM_021586856.2 mRNA upstream 357996 905584 ~ 908460 (+) False LOC110506977
XM_036934986.1 mRNA downstream 42151 1309202 ~ 1390936 (+) False tgfbr2b
XR_005034581.1 mRNA downstream 157265 1424316 ~ 1426277 (+) False LOC118937323
XR_005034582.1 mRNA downstream 157265 1424316 ~ 1426277 (+) False LOC118937323
XM_036935010.1 mRNA downstream 189285 1456336 ~ 1564305 (+) False stt3b
XM_036935000.1 mRNA downstream 207504 1474555 ~ 1564305 (+) True stt3b
TU117843 other upstream 112707 1153061 ~ 1153749 (+) True G104761
TU116937 other upstream 393941 860506 ~ 872515 (+) False cmc1
TU116938 other upstream 393941 860506 ~ 872515 (+) False cmc1
TU116939 other upstream 393941 860506 ~ 872515 (+) True cmc1
TU116869 other upstream 565185 690046 ~ 701271 (+) True G104092
TU118057 other downstream 42227 1309278 ~ 1352863 (+) True tgfbr2b
TU118276 other downstream 432022 1699073 ~ 1700431 (+) True G105036
TU118283 other downstream 441918 1708969 ~ 1710557 (+) True G105042
TU119728 other downstream 1253665 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 1450910 2717961 ~ 2718525 (+) True G106122

Expression Profile