RNA id: TU118085


Basic Information

Item Value
RNA id TU118085
length 276
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G104912
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1303636 ~ 1303911 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGTGATGACTAGTCGTGGGTACATTTGACTGTAACTCTCTCTTACAACACACTTCCTAGTCTCCTACTGTACTTGTGCCTCCAAATCCAATCTTTCCGTTGGTTGTCTGTGACATATCTGGAGATAGAATTGTAAGAGGTATAGTGAGGATGGTCAGTGTGGTACATATGATGGAAGAAGATATAGTGGGGATGTCAGTATGGTAGATATGATAGTAGGAGGTATAGAGTGGATGGTCAGTATGGTAGATGTGGTGATAGGAGGTATAGTGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118084 lncRNA upstream 585 1302428 ~ 1303051 (+) True G104911
TU118052 lncRNA upstream 27363 1276032 ~ 1276273 (+) True G104896
TU118050 lncRNA upstream 31026 1272097 ~ 1272610 (+) True G104894
TU117889 lncRNA upstream 36585 1266456 ~ 1267051 (+) False G104798
TU117890 lncRNA upstream 36585 1266650 ~ 1267051 (+) True G104798
TU118086 lncRNA downstream 1333 1305244 ~ 1305543 (+) True G104913
TU118087 lncRNA downstream 3247 1307158 ~ 1308007 (+) True G104914
TU118101 lncRNA downstream 30075 1333986 ~ 1341510 (+) False G104921
TU118102 lncRNA downstream 30075 1333986 ~ 1341510 (+) False G104921
TU118103 lncRNA downstream 30075 1333986 ~ 1342332 (+) False G104921
XM_036934979.1 mRNA upstream 72101 1023461 ~ 1231535 (+) True rbms3
XM_021594101.2 mRNA upstream 78732 1222130 ~ 1224904 (+) True LOC110515032
XM_036934572.1 mRNA upstream 334108 968616 ~ 969528 (+) True LOC118936923
XM_036934948.1 mRNA upstream 395060 905594 ~ 908576 (+) False LOC110506977
XM_021586856.2 mRNA upstream 395176 905584 ~ 908460 (+) False LOC110506977
XM_036934986.1 mRNA downstream 5291 1309202 ~ 1390936 (+) False tgfbr2b
XR_005034581.1 mRNA downstream 120405 1424316 ~ 1426277 (+) False LOC118937323
XR_005034582.1 mRNA downstream 120405 1424316 ~ 1426277 (+) False LOC118937323
XM_036935010.1 mRNA downstream 152425 1456336 ~ 1564305 (+) False stt3b
XM_036935000.1 mRNA downstream 170644 1474555 ~ 1564305 (+) True stt3b
TU117843 other upstream 149887 1153061 ~ 1153749 (+) True G104761
TU116937 other upstream 431121 860506 ~ 872515 (+) False cmc1
TU116938 other upstream 431121 860506 ~ 872515 (+) False cmc1
TU116939 other upstream 431121 860506 ~ 872515 (+) True cmc1
TU116869 other upstream 602365 690046 ~ 701271 (+) True G104092
TU118057 other downstream 5367 1309278 ~ 1352863 (+) True tgfbr2b
TU118276 other downstream 395162 1699073 ~ 1700431 (+) True G105036
TU118283 other downstream 405058 1708969 ~ 1710557 (+) True G105042
TU119728 other downstream 1216805 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 1414050 2717961 ~ 2718525 (+) True G106122

Expression Profile