RNA id: TU118121


Basic Information

Item Value
RNA id TU118121
length 261
lncRNA type intronic
GC content 0.44
exon number 2
gene id G104937
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1383918 ~ 1384319 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGATCTGTTCCTAGATCAGCTGTTAGGTAACACTATGAACCTGACACAGACAGCACCACAGACTGTGGGATCTGTTCCTAGATCAGCTGTTAGTTAACACCTGACACAAACAGCACTTCATGCTGTGAAAACCATCACACTTTACAGCTGTTGTGAGTTCAGTTTCATGAGGTCTGGACGATATCCCAGAACGTAGTTTTTTAATACTCTTTGGCCCGGGCGGAATGATCTTTCAATTTCCTTCAACTGTTTTTCAGCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118112 lncRNA upstream 12962 1370048 ~ 1370956 (+) True G104928
TU118109 lncRNA upstream 22078 1361460 ~ 1361840 (+) True G104925
TU118107 lncRNA upstream 38463 1344777 ~ 1345455 (+) True G104923
TU118103 lncRNA upstream 41586 1333986 ~ 1342332 (+) False G104921
TU118127 lncRNA downstream 8314 1392633 ~ 1397551 (+) True G104942
TU118132 lncRNA downstream 13922 1398241 ~ 1398624 (+) True G104944
TU118133 lncRNA downstream 17120 1401439 ~ 1402879 (+) True G104945
TU118136 lncRNA downstream 23072 1407391 ~ 1408774 (+) True G104948
TU118142 lncRNA downstream 40100 1424419 ~ 1425242 (+) False LOC118937323
XM_036934979.1 mRNA upstream 152383 1023461 ~ 1231535 (+) True rbms3
XM_021594101.2 mRNA upstream 159014 1222130 ~ 1224904 (+) True LOC110515032
XM_036934572.1 mRNA upstream 414390 968616 ~ 969528 (+) True LOC118936923
XM_036934948.1 mRNA upstream 475342 905594 ~ 908576 (+) False LOC110506977
XM_021586856.2 mRNA upstream 475458 905584 ~ 908460 (+) False LOC110506977
XR_005034581.1 mRNA downstream 39997 1424316 ~ 1426277 (+) False LOC118937323
XR_005034582.1 mRNA downstream 39997 1424316 ~ 1426277 (+) False LOC118937323
XM_036935010.1 mRNA downstream 72017 1456336 ~ 1564305 (+) False stt3b
XM_036935000.1 mRNA downstream 90236 1474555 ~ 1564305 (+) True stt3b
XM_036935034.1 mRNA downstream 185991 1570310 ~ 1573421 (+) False LOC118937324
TU118057 other upstream 31055 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 230169 1153061 ~ 1153749 (+) True G104761
TU116937 other upstream 511403 860506 ~ 872515 (+) False cmc1
TU118276 other downstream 314754 1699073 ~ 1700431 (+) True G105036
TU118283 other downstream 324650 1708969 ~ 1710557 (+) True G105042
TU119728 other downstream 1136397 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 1333642 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 1590504 2974823 ~ 3039475 (+) True G106240

Expression Profile