RNA id: TU118127


Basic Information

Item Value
RNA id TU118127
length 274
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G104942
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1392633 ~ 1397551 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttgttacggtgcgtgaatgaggacccaaaagcgaattaacgtaaacagagcttctttaataacaaaacaaacgtaggctcagatggaccggcagattccgacaggacaggacaaggttgcagcaaacatgacgatagtctggttcaggcatgaataacacaaacaagaatccgacaaagacagaaacaaaaacagagagagatatagaggactaatcagagggaaaaagggaacaggtgggaaaaggggtgacgaggtagttaggaggagaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118121 lncRNA upstream 8314 1383918 ~ 1384319 (+) True G104937
TU118112 lncRNA upstream 21677 1370048 ~ 1370956 (+) True G104928
TU118109 lncRNA upstream 30793 1361460 ~ 1361840 (+) True G104925
TU118107 lncRNA upstream 47178 1344777 ~ 1345455 (+) True G104923
TU118104 lncRNA upstream 51123 1333986 ~ 1341510 (+) False G104921
TU118132 lncRNA downstream 690 1398241 ~ 1398624 (+) True G104944
TU118133 lncRNA downstream 3888 1401439 ~ 1402879 (+) True G104945
TU118136 lncRNA downstream 9840 1407391 ~ 1408774 (+) True G104948
TU118142 lncRNA downstream 26868 1424419 ~ 1425242 (+) False LOC118937323
TU118143 lncRNA downstream 26868 1424419 ~ 1425242 (+) False LOC118937323
XM_036934986.1 mRNA upstream 1697 1309202 ~ 1390936 (+) False tgfbr2b
XM_036934979.1 mRNA upstream 161098 1023461 ~ 1231535 (+) True rbms3
XM_021594101.2 mRNA upstream 167729 1222130 ~ 1224904 (+) True LOC110515032
XM_036934572.1 mRNA upstream 423105 968616 ~ 969528 (+) True LOC118936923
XM_036934948.1 mRNA upstream 484057 905594 ~ 908576 (+) False LOC110506977
XR_005034581.1 mRNA downstream 26765 1424316 ~ 1426277 (+) False LOC118937323
XR_005034582.1 mRNA downstream 26765 1424316 ~ 1426277 (+) False LOC118937323
XM_036935010.1 mRNA downstream 58785 1456336 ~ 1564305 (+) False stt3b
XM_036935000.1 mRNA downstream 77004 1474555 ~ 1564305 (+) True stt3b
XM_036935034.1 mRNA downstream 172759 1570310 ~ 1573421 (+) False LOC118937324
TU118057 other upstream 39770 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 238884 1153061 ~ 1153749 (+) True G104761
TU116937 other upstream 520118 860506 ~ 872515 (+) False cmc1
TU118276 other downstream 301522 1699073 ~ 1700431 (+) True G105036
TU118283 other downstream 311418 1708969 ~ 1710557 (+) True G105042
TU119728 other downstream 1123165 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 1320410 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 1577272 2974823 ~ 3039475 (+) True G106240

Expression Profile