RNA id: TU118136


Basic Information

Item Value
RNA id TU118136
length 340
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G104948
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1407391 ~ 1408774 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGATTATATTGGGATCTATTGGTTGAGACTACATTGAGGTTATATTGGGGTCTGTTGGTTGAGGCCATGTTGACACTACATTGAGGTTATATTGGGGATCTGTTGGTTGAGGCTATGTTGAGACTACATTGGGGTTATATTGGGGATCTGTTGGTTGAGGCTATGTTGAGACTACATTGAGGTTATATTGGGGTCTGTTGGTTGAGGCCATGTTGACACTACATTGAGGTTATATTGGGGTCTGTTGGTTGAGGCCATGTTGACACTACATTGAGATTATATTGGGGTCTGTTGGTTGAGGCTATGTTGAGACTACATTGAGGTTATATTGGGGTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118133 lncRNA upstream 4512 1401439 ~ 1402879 (+) True G104945
TU118132 lncRNA upstream 8767 1398241 ~ 1398624 (+) True G104944
TU118127 lncRNA upstream 9840 1392633 ~ 1397551 (+) True G104942
TU118121 lncRNA upstream 23072 1383918 ~ 1384319 (+) True G104937
TU118112 lncRNA upstream 36435 1370048 ~ 1370956 (+) True G104928
TU118142 lncRNA downstream 15645 1424419 ~ 1425242 (+) False LOC118937323
TU118143 lncRNA downstream 15645 1424419 ~ 1425242 (+) False LOC118937323
TU118144 lncRNA downstream 15645 1424419 ~ 1426453 (+) False LOC118937323
TU118145 lncRNA downstream 15645 1424419 ~ 1426453 (+) False LOC118937323
TU118146 lncRNA downstream 15645 1424419 ~ 1426453 (+) False LOC118937323
XM_036934986.1 mRNA upstream 16455 1309202 ~ 1390936 (+) False tgfbr2b
XM_036934979.1 mRNA upstream 175856 1023461 ~ 1231535 (+) True rbms3
XM_021594101.2 mRNA upstream 182487 1222130 ~ 1224904 (+) True LOC110515032
XM_036934572.1 mRNA upstream 437863 968616 ~ 969528 (+) True LOC118936923
XM_021586864.2 mRNA upstream 498931 905618 ~ 908460 (+) True LOC110506977
XR_005034581.1 mRNA downstream 15542 1424316 ~ 1426277 (+) False LOC118937323
XR_005034582.1 mRNA downstream 15542 1424316 ~ 1426277 (+) False LOC118937323
XM_036935010.1 mRNA downstream 47562 1456336 ~ 1564305 (+) False stt3b
XM_036935000.1 mRNA downstream 65781 1474555 ~ 1564305 (+) True stt3b
XM_036935034.1 mRNA downstream 161536 1570310 ~ 1573421 (+) False LOC118937324
TU118057 other upstream 54528 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 253642 1153061 ~ 1153749 (+) True G104761
TU116937 other upstream 534876 860506 ~ 872515 (+) False cmc1
TU118276 other downstream 290299 1699073 ~ 1700431 (+) True G105036
TU118283 other downstream 300195 1708969 ~ 1710557 (+) True G105042
TU119728 other downstream 1111942 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 1309187 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 1566049 2974823 ~ 3039475 (+) True G106240

Expression Profile