RNA id: TU118160


Basic Information

Item Value
RNA id TU118160
length 616
lncRNA type intronic
GC content 0.56
exon number 2
gene id G104963
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1452188 ~ 1452833 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgccattgtcctggttGGAAGAAGGGTCTGTGaatggggaggtgcagcgtgaggtaatacagtagggggaggtgcagagtgaggtaatacagtagggggaggtgcagcgtgaggtaatacagtagggcaggtgcagcgtgaggtaatacagtaggggaggtgcagcgtgaggtaatacagtaggggaggtgcagcgtgaggtaatacagtagggggaggagcagcgtgaggtaatacagtagggggaggtgcagcgtgaggtaatacagtagggggaggtgcagcgtgaggtaatacagtagggggaggtgcagcgtgaggtaatacagtaggggaggtgcagcgtgaggtaatacagtagggggaggagcagcgtgaggtaatacagtagggggaggtgcagcgtgaggtaatacagtagggggaggtgcagcgtgaggtaatacagtagggggaggtgcagcgtgaggtaatacagtaggggaggtgcagcgtgaggtaatacagtagggggaggtgcagtgtgaggtaatacagtaggggaggtgcagcgtgaggtaatacagtagggggaggtgcagcgtgaggtaatacagtaggggaggtgtagcgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118155 lncRNA upstream 2748 1448721 ~ 1449440 (+) False G104959
TU118156 lncRNA upstream 2748 1448721 ~ 1449440 (+) True G104959
TU118150 lncRNA upstream 7025 1444535 ~ 1445163 (+) True G104955
TU118145 lncRNA upstream 25735 1424419 ~ 1426453 (+) False LOC118937323
TU118179 lncRNA downstream 5855 1458688 ~ 1459328 (+) True G104979
TU118182 lncRNA downstream 7704 1460537 ~ 1463337 (+) True G104981
TU118188 lncRNA downstream 23727 1476560 ~ 1479662 (+) True G104986
TU118191 lncRNA downstream 31104 1483937 ~ 1484619 (+) True G104989
TU118196 lncRNA downstream 39469 1492302 ~ 1493023 (+) True G104992
XR_005034581.1 mRNA upstream 25911 1424316 ~ 1426277 (+) False LOC118937323
XR_005034582.1 mRNA upstream 25911 1424316 ~ 1426277 (+) False LOC118937323
XM_036934986.1 mRNA upstream 61252 1309202 ~ 1390936 (+) False tgfbr2b
XM_036934979.1 mRNA upstream 220653 1023461 ~ 1231535 (+) True rbms3
XM_036935010.1 mRNA downstream 3503 1456336 ~ 1564305 (+) False stt3b
XM_036935000.1 mRNA downstream 21722 1474555 ~ 1564305 (+) True stt3b
XM_036935034.1 mRNA downstream 117477 1570310 ~ 1573421 (+) False LOC118937324
XM_036935045.1 mRNA downstream 117718 1570551 ~ 1573421 (+) False LOC118937324
XM_036935038.1 mRNA downstream 117748 1570581 ~ 1573421 (+) False LOC118937324
TU118057 other upstream 99325 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 298439 1153061 ~ 1153749 (+) True G104761
TU116937 other upstream 579673 860506 ~ 872515 (+) False cmc1
TU118276 other downstream 246240 1699073 ~ 1700431 (+) True G105036
TU118283 other downstream 256136 1708969 ~ 1710557 (+) True G105042
TU119728 other downstream 1067883 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 1265128 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 1521990 2974823 ~ 3039475 (+) True G106240

Expression Profile