RNA id: TU118191


Basic Information

Item Value
RNA id TU118191
length 297
lncRNA type intronic
GC content 0.49
exon number 2
gene id G104989
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1483937 ~ 1484619 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagagagagagagagagagagagagagagagagggagagagagagatggagagagagagagggagagagagagagagagagagggagagagagaggctgtttgTATATAGAGCTGTGAGGGTGACTGCTTTACCAGATGGCCTTttttcctctctttatccctcgcctctctctttctcacactctcaTACTTTCGTCTCTCTCTTCATATTCTCGTCTCTTTCTTTGTCCTCATACCCTCGTCTCCCCCCCAGATACAGTTTCTATCCCCCCCAGATACAGTTTCTATCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118188 lncRNA upstream 4275 1476560 ~ 1479662 (+) True G104986
TU118182 lncRNA upstream 20600 1460537 ~ 1463337 (+) True G104981
TU118179 lncRNA upstream 24609 1458688 ~ 1459328 (+) True G104979
TU118160 lncRNA upstream 31104 1452188 ~ 1452833 (+) True G104963
TU118155 lncRNA upstream 34497 1448721 ~ 1449440 (+) False G104959
TU118196 lncRNA downstream 7683 1492302 ~ 1493023 (+) True G104992
TU118203 lncRNA downstream 27673 1512292 ~ 1514245 (+) False G104997
TU118204 lncRNA downstream 27673 1512292 ~ 1514245 (+) False G104997
TU118206 lncRNA downstream 27673 1512292 ~ 1514245 (+) True G104997
TU118208 lncRNA downstream 29914 1514533 ~ 1515041 (+) True G104999
XR_005034581.1 mRNA upstream 57660 1424316 ~ 1426277 (+) False LOC118937323
XR_005034582.1 mRNA upstream 57660 1424316 ~ 1426277 (+) False LOC118937323
XM_036934986.1 mRNA upstream 93001 1309202 ~ 1390936 (+) False tgfbr2b
XM_036934979.1 mRNA upstream 252402 1023461 ~ 1231535 (+) True rbms3
XM_036935034.1 mRNA downstream 85691 1570310 ~ 1573421 (+) False LOC118937324
XM_036935045.1 mRNA downstream 85932 1570551 ~ 1573421 (+) False LOC118937324
XM_036935038.1 mRNA downstream 85962 1570581 ~ 1573421 (+) False LOC118937324
XM_036935050.1 mRNA downstream 85962 1570581 ~ 1573421 (+) True LOC118937324
XR_005034596.1 mRNA downstream 103563 1588182 ~ 1588650 (+) False LOC118937327
TU118057 other upstream 131074 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 330188 1153061 ~ 1153749 (+) True G104761
TU116937 other upstream 611422 860506 ~ 872515 (+) False cmc1
TU118276 other downstream 214454 1699073 ~ 1700431 (+) True G105036
TU118283 other downstream 224350 1708969 ~ 1710557 (+) True G105042
TU119728 other downstream 1036097 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 1233342 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 1490204 2974823 ~ 3039475 (+) True G106240

Expression Profile