RNA id: TU118668



Basic Information


Item Value
RNA id TU118668
length 632
RNA type TUCP
GC content 0.42
exon number 2
gene id G105285
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1540730 ~ 1541706 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctgttaaatatggaccaataacatctgttaaatatggaccaataacatctgttaaatatggaccaataacatctgttaaatatgtgtatggaccaataacatctgttaacagatgttattggtccatatataacagatgttattggtccatatataacagatgttattggtcacatatttaacagatgttattggtccatatttaacagatgttattggtccatatttaacagatgttattggtccatatttaacagatgttattggtccatatttaacagatgttattggtccatatataacagatgttattggtccatatttaacagatgttattggtccatatttaacaggtgttattggtccatatttaacagatgttattggtccatatttaacagatgttattggtccatatataaaagatgttattggtcacagagaGCCTCTAGTCATACTTTATCATAGAGGTTTCCAGAGAGCCTCTAGTCATCCTCATACCTTATCATAGAGGTTTCCAGAGAGCCTCTAGTCATCCTCAAATCTTATCATAGAGGTTTCCAGAGGGCCTCTAGTCATCCTCAAACCTTATCATAGAGGTTTCCAGAGAGCCTCTAGTCATACCTTATCAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU118704 lncRNA downstream 5099 1530901 ~ 1535631 (-) True G105311
TU118667 lncRNA downstream 9831 1530582 ~ 1530899 (-) True G105284
TU118701 lncRNA downstream 18099 1521497 ~ 1522631 (-) False G105308
TU118700 lncRNA downstream 18099 1522177 ~ 1522631 (-) True G105308
TU118695 lncRNA downstream 24029 1515683 ~ 1516701 (-) True G105305
TU118710 lncRNA upstream 795 1542501 ~ 1545710 (-) False G105314
TU118714 lncRNA upstream 1384 1543090 ~ 1547618 (-) False G105314
TU118715 lncRNA upstream 4392 1546098 ~ 1547618 (-) False G105314
TU118713 lncRNA upstream 5112 1546818 ~ 1547618 (-) True G105314
TU118626 lncRNA upstream 16045 1557751 ~ 1558175 (-) True G105273
XM_036935016.1 mRNA downstream 83597 1427251 ~ 1457133 (-) True LOC110515934
XR_005034578.1 mRNA downstream 224485 1315664 ~ 1316245 (-) False LOC118937319
XR_005034579.1 mRNA downstream 224650 1315664 ~ 1316080 (-) False LOC118937319
XM_036934934.1 mRNA downstream 635312 879818 ~ 905418 (-) True azi2
XM_036934936.1 mRNA downstream 635315 879818 ~ 905415 (-) False azi2
XM_036935030.1 mRNA upstream 31696 1573402 ~ 1683489 (-) False LOC110515405
XM_021593425.2 mRNA upstream 161245 1702951 ~ 1704863 (-) True kiaa1143
XM_036935120.1 mRNA upstream 167810 1709516 ~ 1731976 (-) False zdhhc3a
XM_036935112.1 mRNA upstream 167810 1709516 ~ 1731988 (-) False zdhhc3a
XM_036935117.1 mRNA upstream 167810 1709516 ~ 1732333 (-) False zdhhc3a
TU118548 other downstream 198395 1333986 ~ 1342335 (-) False G105220
TU118629 other upstream 52075 1593781 ~ 1619036 (-) False LOC110515405
TU118763 other upstream 99561 1641267 ~ 1641732 (-) True G105340
TU118889 other upstream 370886 1912592 ~ 1916995 (-) False G105427
TU118905 other upstream 370886 1912592 ~ 1916995 (-) False G105427
TU118893 other upstream 370966 1912672 ~ 1916995 (-) False G105427

Expression Profile