RNA id: TU118649


Basic Information

Item Value
RNA id TU118649
length 3709
lncRNA type antisense_over
GC content 0.44
exon number 5
gene id G105277
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1566811 ~ 1571758 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actgttattacccaGTAGGCCACAGGAGGGGTTGTCTTTCCAGCTgtctccactgttattacccaGTAGGCCACAGGAGGGAATTTCCTTCCAGCTGTATGATGTATGTAAGATCCAAGGATCTAATGATTTGTCCATAATTAACACTCAACACCAAACACACTGTTTAGTGAAGAGTCTTCCTTCAGCCCTTCTGTTctatgatgtacagtatatacataccgGTTATGTATGTTTGTCACACTTGACTTGGACACTGTTCATAACACAATGGCCCAGTATAGAGAACAGCGTTTCCTCCAGCCCCTTCAGAGGTGAACACTGCTACAATGTCAAAGTCAAAGCCATTTCTTCAACCCACACCAGCAATCTTCAGTATTCACACACTAACGTTGGAATGATTGGAACCAGGAAGTAGCCCGGTGCTCCAGTCTGTTTGTCCTTTTATATGGCCGAACCTTGAAGAGATCTTTATAGGGCCGAACCTTGAAGAGATCTTTATAGGGCCGAACCTTGAAGAAATCTTTATATGGCCGAACCTTGAAGAGATCTTTATAGAGTCTAATTTATGGCAGAACCTTGAAGAAATCTTTATAGAGTCTAATTTATGGCAGAACCTTGAAGAGATCTTTATAGAGTCTAATTTATGGCCGAACCTTGAAGAGATCTTTATAGGGCCGAACCTTGAAGAGATCTTTATAGGGCCGAACCTTGAAGAAATCTTTATATGGCCGAACCTTGAAGAGATCTTTATAGAGTCTAATTTATGGCCGAACCTTGAAGAGATCTTTATAGGGCCGGACCTTGAAGAGATCTTTATAGAGTCTAATTTATGGCCGAACCTTGAAGAAATCTTTATAGAGTCTAATTTATGGCCAAACCTTGAAGAGATCTTTATAGAGTCTAATTTATGGCCTATCCTTGAAGAGATCTTTATAGAGTCTAATTTATGGCCGAACCTTGTAGAGATATTTATAGAGTCTAATTTATGGCCTATCCTTGAAGAGATCTTTATAGAGTCTAATTTATGGCCTAACCTTGAAGAGATAGTGAAGGTCAGAGAGAAAGGTAGACTACCTCCACTATACAGCCTTCACCACAGTAGTACAGTGTACTGAATGTGGCTTGGCTGCCTCCCAAATATTCCCCACATAGTACCTTTACTTTGgaccaggccctggtcaaaagtagtgcattacatagggaatagggtgccatttgggaggtacAAATCCAACCGTATCCAGCAGGTACAAATCCAACCGTATCCAGGAGGTACAAATCCAACCGTATCCAGGAGGTACAAATCCAACCGCTATATAGAGAGATATGTTGACCCTTGATTTATTTAATCCACGTCTGATATTTATTCTCCTGGTTTTCAATATTCTGTGATCCTAGGCTTAGATTCAATCTGGGCCGCGGGAAGATAGGCGCTATAACAAGATttacatttaaaggcaatgtttcctGCGTCAGCGGATACTGCATTCACGGTATGTCAGCTCAATATGAAATGATCTTTACATTTCAAATCGGGCTTTATGGTGGATCTTCAACGGCCCGTATTAAATCAATCTAGCCCCGTAGTCTGTCTTGTCGCCAGCCATCTCTTTCTGTGTGGTAATGAgcctgggggggggggcgagGTTAGATCTTACTTAACAAACAGCAGGAGAGCTGCTCCAGTACTGGTTCCTTCCCTGACATGTTTTGTCTTAATTACAACATGTAGCAGAGGTGCCAACGACCATGTCTTCACCTTAAACAACACCGGGAGAGACTCACCCATCACCACAGCTGGTCCCTCTACTAACAATCTGTCTCCGATGTGTCGGTAGAAATTACAACGTTCATCGGTTAGGTAACTCTAGTCTGAATATAATTCCTAAATTCTCCTTCAACCGAATCCTCATGCAGTTTTGTTGTTGTCGTGATCATATAATGGAGATGACTGTGTATGAAATGAAGGAGAGGCATTTTGTCCTGCCTCATTTAAACTGACTGAGAAACAGTAGTTGCTAACTGGGATCCTTGGGATGAACCTACCCATTGAAGCAGCATCATACCCATTTATCATACAGGGATGATTTCTGTCTCTTGAAAACTTGCTGACAAATCAAACATTTTGGGACGATGTCAACACTAATGAAACAAAtgccaaaatatatttttctttaaCTGTCTTTACATTTGAACTTCAATGAGGTGACATCAGAGTTGGACGTCCCAAGGATTACATTTAGCATGTACTCTTTGTAGACAGGAGCATGGCAGTGAGAGCTATAGAGGTCATTTTATCAGTAATATGGGTATGTTGAGAATCTATGGACCCTTTCACACTATCGTGCCAAGCAGAACCAACCTGCTGACTCAGATAGTTTCCTTTCACATGGTTCTTTCCAGCAACTATGGTAGATGTGGAACCAGGCCAGTTTGGCTGAGTGGTGTGAACAGCTCTTAACTCCTCTGTGGAACCAGGCCAGTCCAGTTTGGCTGAGTGGTGTGAACAGCTCTTACCTCCTCTGTGGAACCAGTCCAGTTTGGCTGAGTGGTGTGAACAGCTCTTACCTCCTCTGTGGAACCAGGCCAGTCCAGTTTGGCTGAATGGTGTGAACAACTCTTACCTCCTCTGTGGAACCAGTCCAGTTTGGCTGAGTGGTGTGAACAGCTCTTAACTCCTCTGTGGAACCAGTCCAGTTTAGCTGAGTGGTGTGAACAGCTCTTACCTCCTCTGTGGAACCAGTCCAGTTTGGCTGAGTGGTGTGAACAGCTCTTACCTCCTCTGTGGAACCAGTCCAGTTTGGCTGAGTGGTGTGAACAGCTCTTAACTCCTCTGTGGAACCAGGCCAGTCCAGTTTAGCTGAGTGGTGTGAACAGCTCTTACCTCCTCTGTCCTGTCAGTATAAGATCAGCCACGTTTTTAGTATGAATGTTATTATGTGTAAAGTGTGAAGTGCAACACTGCAGCGTACGTCATCAGTCACTGAGCCTCGACCAAAACATTCtgtgggtgtgtcccaaatggctccctattccccacagggctttggtctaaagtagtgcactatgtagggaatagggtgccatttgggatgtacaatCACCTGTGTAGAACCTATGCAACACTTGACTTGGAAAGTCGTCTAAGACATGGTACAGCCAGGGGACAGGGTTTACCATGTATACTATGTATTAGATGAATAAATATCTCCTCACGttctgttgttgttctgttgttggcaGGCCGTCTGTGGTGTGGGATGGGGATTTAGCCCGGGAACCACTGTGAatactatctctctctcgttcactaTCGTATTTAAGTGAAACAGAGAATGATATGACAGTTTGGATTTCGGACGACCGGGTTTGAGGAGAGGATGTCGAGAGGTCGGTAGAAAACACAAAGTAGCTCTTCTCAGGTCTCAAGAATATAACTGATTCTAGTACCTGCATGTCATGCAGACGTTGTTGTAAAATATCTTCACAGTTAACTGGCGCAAACTGGCGGTgagtgctgccatctagtggatcgtaacagaaacacacacaagtaCATTTGGAATCCTCCGTGACGAGACAAAAAGCTGTGTTGGGATCGAGAGGAAGAGTTTTGACAAAACGACACGCAGAGACAATTTAATGCAACCTCTTTAATAAATTAAAAAAAGAAGGTATCTTTCATTCTCACACCCCACCAGCATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118626 lncRNA downstream 8636 1557751 ~ 1558175 (-) True G105273
TU118714 lncRNA downstream 19193 1543090 ~ 1547618 (-) False G105314
TU118715 lncRNA downstream 19193 1546098 ~ 1547618 (-) False G105314
TU118713 lncRNA downstream 19193 1546818 ~ 1547618 (-) True G105314
TU118710 lncRNA downstream 21101 1542501 ~ 1545710 (-) False G105314
TU118720 lncRNA upstream 315 1572073 ~ 1572329 (-) True G105319
TU118721 lncRNA upstream 4522 1576280 ~ 1599501 (-) True G105320
TU118725 lncRNA upstream 15281 1587039 ~ 1589451 (-) True G105323
TU118727 lncRNA upstream 15777 1587535 ~ 1588950 (-) True G105324
TU118739 lncRNA upstream 17828 1589586 ~ 1591451 (-) True G105325
XM_036935016.1 mRNA downstream 109678 1427251 ~ 1457133 (-) True LOC110515934
XR_005034578.1 mRNA downstream 250566 1315664 ~ 1316245 (-) False LOC118937319
XR_005034579.1 mRNA downstream 250731 1315664 ~ 1316080 (-) False LOC118937319
XM_036934934.1 mRNA downstream 661393 879818 ~ 905418 (-) True azi2
XM_036934936.1 mRNA downstream 661396 879818 ~ 905415 (-) False azi2
XM_036935030.1 mRNA upstream 1644 1573402 ~ 1683489 (-) False LOC110515405
XM_021593425.2 mRNA upstream 131193 1702951 ~ 1704863 (-) True kiaa1143
XM_036935120.1 mRNA upstream 137758 1709516 ~ 1731976 (-) False zdhhc3a
XM_036935112.1 mRNA upstream 137758 1709516 ~ 1731988 (-) False zdhhc3a
XM_036935117.1 mRNA upstream 137758 1709516 ~ 1732333 (-) False zdhhc3a
TU118668 other downstream 25105 1540730 ~ 1541706 (-) True G105285
TU118548 other downstream 224476 1333986 ~ 1342335 (-) False G105220
TU118629 other upstream 22023 1593781 ~ 1619036 (-) False LOC110515405
TU118763 other upstream 69509 1641267 ~ 1641732 (-) True G105340
TU118889 other upstream 340834 1912592 ~ 1916995 (-) False G105427
TU118905 other upstream 340834 1912592 ~ 1916995 (-) False G105427
TU118893 other upstream 340914 1912672 ~ 1916995 (-) False G105427

Expression Profile