RNA id: TU118309


Basic Information

Item Value
RNA id TU118309
length 1011
lncRNA type intronic
GC content 0.35
exon number 2
gene id G105060
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1649607 ~ 1650827 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctagagatatcagggTTTATTGGTGTGGGCTGTGTGTCAATCCACCACTAGAGATATCAGGGTTTCTTGGTGTGGGCTGTGTGTCAACGCACCACTAGAGATATCAGGGTTTCTTGGTGTGGGCTGTGTCTAGAGATATCAGGGTTTCTTGGTGTGGGCTGTGGGCTGTGTGTCAATCTCCCACTAGAGATATCAGGGTTTCTTGGTGTGGGCTGTGTGTCAACGCACCACTAGAGATATCAGGGTTTCTTGGTGTGGGCTGTGTCTAGAGATATCAGGGTTTCTTGGTGTGGGCTGTGGGCTGTGTGTCAATCTCCCACTAGAGATATCAGGGTTTCTTGGTGTGGGCTGTGTCTAGAGATATCAGGGTTTCTTGGTGTGGGCTGTGTCTAGAGATATCAGGGTTTCTTGGTGTGGGCTGTGGGCTGTGTGTCAATCTCCCACTAGAGATATCAGGGTTTCTTGGTGTGGGCTGTGTGTCAATCCCCCACTAGAGATATCAGGGTTTCTTGGTGTGGGCTGTGTCTAGAGATATCAGGGTTTCTTGGTGTGGGCTGTGTCTAGAGATATCAGGGTTTCTTGGTGTGGGCTGTGTCTAGAGATATCAGGGTTTCTTGGTGTGGGCTGTGTGTCAATCCCCCACTAGAGATATCAGGGTTTCTTGGTGTGGGCTGTGTCTAGAGATATCAGGGTTTCTTGGTGTGGGCTGTGTGTCAATCCACCACTATAGATATCAGGGTTTCTTGGTGTGGGCTGTGTCTAGAGATATCAGGGTTTCTTGGTGTGGGCTGTGTCTAGAGATATCAGGGTTTCTTGGTGTGGGCTGTGTCTAGAGATATCAGGGTTTCTTGGTGTGGGCTGTGTGTCAATCCAACACATCTGTCTACTGTACGTCGGCCTTCTGCATCTGTGgaggaaggtggccgagctacagcggtgtttgtcagaccaggagacatcctgaaaatggATCCTCTCACGGaaacgtctgtagcgtctgaacggtttggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118306 lncRNA upstream 310 1648957 ~ 1649297 (+) True G105058
TU118300 lncRNA upstream 8570 1640822 ~ 1641037 (+) True G105052
TU118294 lncRNA upstream 15190 1633737 ~ 1634417 (+) True G105049
TU118241 lncRNA upstream 50066 1598721 ~ 1599541 (+) False G105020
TU118242 lncRNA upstream 50066 1598853 ~ 1599541 (+) True G105020
TU118312 lncRNA downstream 10761 1661588 ~ 1662075 (+) False G105063
TU118313 lncRNA downstream 10761 1661588 ~ 1662075 (+) True G105063
TU118314 lncRNA downstream 11478 1662305 ~ 1662525 (+) True G105064
TU118315 lncRNA downstream 11726 1662553 ~ 1663100 (+) True G105065
TU118318 lncRNA downstream 14311 1665138 ~ 1665423 (+) True G105068
XR_005034594.1 mRNA upstream 42834 1605140 ~ 1606773 (+) False LOC118937325
XM_036935053.1 mRNA downstream 32734 1683561 ~ 1698369 (+) True gpd1l
XM_021594953.2 mRNA downstream 54062 1704889 ~ 1707675 (+) False tmem42a
XR_005034588.1 mRNA downstream 54062 1704889 ~ 1707675 (+) True tmem42a
XM_036935139.1 mRNA downstream 94471 1745298 ~ 1794938 (+) False LOC110514512
XM_036935148.1 mRNA downstream 94471 1745298 ~ 1794938 (+) True LOC110514512
TU118057 other upstream 296744 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 495858 1153061 ~ 1153749 (+) True G104761
TU116937 other upstream 777092 860506 ~ 872515 (+) False cmc1
TU118276 other downstream 48246 1699073 ~ 1700431 (+) True G105036
TU118283 other downstream 58142 1708969 ~ 1710557 (+) True G105042
TU119728 other downstream 869889 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 1067134 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 1323996 2974823 ~ 3039475 (+) True G106240

Expression Profile