RNA id: TU118781



Basic Information


Item Value
RNA id TU118781
length 285
lncRNA type intronic
GC content 0.50
exon number 1
gene id G105355
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1658184 ~ 1658468 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


taggtagtactgctctggtaggactgtaggtaggtagtactgctctggtaggactgtaggtaggtaggtagtactgctctggtaggactgtaggtaggtaggtagtactgctctggtaggactgtaggtaggtagtactgctctgttaggactgtaggtaggtagtactgctctggtaggactgtaggtaggtagtactgctctggtagggctgtaggtaggtagtactgctctggtagggctgtaggtaggtagtactgctctggtaggactgtaggtaggtag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU118779 lncRNA downstream 103 1655274 ~ 1658081 (-) True G105353
TU118778 lncRNA downstream 2525 1655047 ~ 1655659 (-) True G105352
TU118777 lncRNA downstream 3373 1654173 ~ 1654811 (-) True G105351
TU118776 lncRNA downstream 4375 1653563 ~ 1653809 (-) True G105350
TU118775 lncRNA downstream 5852 1652089 ~ 1652332 (-) True G105349
TU118782 lncRNA upstream 1762 1660230 ~ 1660653 (-) True G105356
TU118796 lncRNA upstream 9547 1668015 ~ 1678048 (-) True G105368
TU118804 lncRNA upstream 21150 1679618 ~ 1679916 (-) True G105376
TU118665 lncRNA upstream 24301 1682769 ~ 1683026 (-) True LOC110515405
TU118810 lncRNA upstream 31498 1689966 ~ 1693400 (-) True G105381
XM_036935016.1 mRNA downstream 201051 1427251 ~ 1457133 (-) True LOC110515934
XR_005034578.1 mRNA downstream 341939 1315664 ~ 1316245 (-) False LOC118937319
XR_005034579.1 mRNA downstream 342104 1315664 ~ 1316080 (-) False LOC118937319
XM_036934934.1 mRNA downstream 752766 879818 ~ 905418 (-) True azi2
XM_036934936.1 mRNA downstream 752769 879818 ~ 905415 (-) False azi2
XM_021593425.2 mRNA upstream 44483 1702951 ~ 1704863 (-) True kiaa1143
XM_036935120.1 mRNA upstream 51048 1709516 ~ 1731976 (-) False zdhhc3a
XM_036935112.1 mRNA upstream 51048 1709516 ~ 1731988 (-) False zdhhc3a
XM_036935117.1 mRNA upstream 51048 1709516 ~ 1732333 (-) False zdhhc3a
XM_036935127.1 mRNA upstream 51048 1709516 ~ 1732333 (-) False zdhhc3a
TU118763 other downstream 16452 1641267 ~ 1641732 (-) True G105340
TU118629 other downstream 39148 1593781 ~ 1619036 (-) False LOC110515405
TU118668 other downstream 116478 1540730 ~ 1541706 (-) True G105285
TU118550 other downstream 315849 1333986 ~ 1342335 (-) False G105220
TU118889 other upstream 254124 1912592 ~ 1916995 (-) False G105427
TU118905 other upstream 254124 1912592 ~ 1916995 (-) False G105427
TU118893 other upstream 254204 1912672 ~ 1916995 (-) False G105427
TU118896 other upstream 254204 1912672 ~ 1916995 (-) False G105427
TU118901 other upstream 254204 1912672 ~ 1916995 (-) False G105427

Expression Profile