RNA id: TU118330


Basic Information

Item Value
RNA id TU118330
length 349
lncRNA type intronic
GC content 0.43
exon number 2
gene id G105078
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1679058 ~ 1679487 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTGCAACACTTGTTGTGATTTCTGTCCCACTTCCCAGAAGAGCTCAGGTACTGTGATGTACTGTTCCACTTCCTAGAAGAGCTCAGGTACTGTGATGTACTGTTCCACTTCCCAGAAGAGCTCAGGTACTGTGATCTACTTCTGTCCCACTTCCCAGAAGAGCTCAGgTACTGTGATCTACTTCTGTCCCACTTCCCAGAAGAGCTCAGGTACTGTGATCTACTTCTGTCCCACTTCCCAGAAGAGCTCAGGTACTGTGATCTACTTCTGTTCCAGTTCCTAGAAGAGCTCAGGTAGTGTGATCTACTTCTGTTCCGGTTCCCAGAAGAGCTCAGGTAGTGTGATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118326 lncRNA upstream 5265 1673026 ~ 1673793 (+) True G105074
TU118319 lncRNA upstream 12549 1666029 ~ 1666509 (+) True G105069
TU118318 lncRNA upstream 13635 1665138 ~ 1665423 (+) True G105068
TU118315 lncRNA upstream 15958 1662553 ~ 1663100 (+) True G105065
TU118314 lncRNA upstream 16533 1662305 ~ 1662525 (+) True G105064
TU118336 lncRNA downstream 16456 1695943 ~ 1696425 (+) True G105083
TU118259 lncRNA downstream 23468 1702955 ~ 1704314 (+) False G105030
TU118260 lncRNA downstream 23468 1702955 ~ 1704314 (+) False G105030
TU118261 lncRNA downstream 23468 1702955 ~ 1704846 (+) True G105030
TU118345 lncRNA downstream 42508 1721995 ~ 1722691 (+) False G105091
XR_005034594.1 mRNA upstream 72285 1605140 ~ 1606773 (+) False LOC118937325
XM_036935053.1 mRNA downstream 4074 1683561 ~ 1698369 (+) True gpd1l
XM_021594953.2 mRNA downstream 25402 1704889 ~ 1707675 (+) False tmem42a
XR_005034588.1 mRNA downstream 25402 1704889 ~ 1707675 (+) True tmem42a
XM_036935139.1 mRNA downstream 65811 1745298 ~ 1794938 (+) False LOC110514512
XM_036935148.1 mRNA downstream 65811 1745298 ~ 1794938 (+) True LOC110514512
TU118057 other upstream 326195 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 525309 1153061 ~ 1153749 (+) True G104761
TU116937 other upstream 806543 860506 ~ 872515 (+) False cmc1
TU118276 other downstream 19586 1699073 ~ 1700431 (+) True G105036
TU118283 other downstream 29482 1708969 ~ 1710557 (+) True G105042
TU119728 other downstream 841229 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 1038474 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 1295336 2974823 ~ 3039475 (+) True G106240

Expression Profile