RNA id: TU118260


Basic Information

Item Value
RNA id TU118260
length 1113
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G105030
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1702955 ~ 1704846 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTAAGGCCTTGATGTATTTTAATAGTTACATTTCAAACTTATTCAACTAAACATCATcataacaaaaaaacacacaatacaatCACAGAAAAATCCAACACCTCGGCATCAAACCAACGCAGTGGTTTAACTAAAGACATCTTTTGCTGCTCCGTTGTCGAAGCTAAAACATATTTGTACATCCAATGAATTATTGACTGTAGAAAAGTATCACATCACAACGCTCcagactatatatatttttttttaaaccaaaagCCACCAGCTCATTGCTTCCCCCATTTAGTAGCTGTTGTCACCTTGATAAAATCTTCGATCCAGACTGTGTGTTGGCTGTATGAAAAAGTGCAGAGGATCCACTGAAGGACGGATGACTACAGTTGTAATGGATGGATAATAGGCCCACGGTGAGTCACTATACAACATTTCAAACAGCAGAGACATGTCTTATAGTCGACAAAGAATAACAGCATGCATCTTATGTAATCTAAAAGATCTTTGATCGTGAATGAGATTGAAGGGGTTTGTTTCACATACATGTCCAGATTCCACCTCCAAAAAAGAGGGGATGACCCGTAATGTCTAAGGATCTTAGTCTAGTGGGACAAACTACGATGTGGAGCTATTCTATGTTGGTTTTTTTTGCCCATAGTAAAAACCAACAACCGCAGTAGATCAGTTCCATCATCCATGAGCGGTTGATTGCTCTAGTCTGATATCCCTGCGGTGAATTCACTTCTagtcctcatcctcatcctctccGAAAGAGAGAAGACTCTTGTTCTTCACCTTCTTTTCAGACTTCTCCTTtttctcttcatctcctccttcactctttccttcactcttcttcttcttgttgttgttagAGCTGGCGGTGATGCCCTGGAACTTGTCGGAGGAGCGCTTCGTGGGCTTCTTGAACAGGATCTTTCCGTCCGCAGGAGGCTTGTCTTCTGTAGGCAGCAAGGAGAAGAGGCAGatgaaAATGACAACTTGAGGCAGCTCATCTTCACGATCACTGCCACTGTCATCCTCCAAGGCTGGTATCTCTAAACGCTGCGGGAACAGTGACCAGGTTGAATATCACCATATTGACATCATACCAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118336 lncRNA upstream 6530 1695943 ~ 1696425 (+) True G105083
TU118330 lncRNA upstream 23468 1679058 ~ 1679487 (+) True G105078
TU118326 lncRNA upstream 29162 1673026 ~ 1673793 (+) True G105074
TU118319 lncRNA upstream 36446 1666029 ~ 1666509 (+) True G105069
TU118318 lncRNA upstream 37532 1665138 ~ 1665423 (+) True G105068
TU118345 lncRNA downstream 17681 1721995 ~ 1722691 (+) False G105091
TU118346 lncRNA downstream 17681 1721995 ~ 1722691 (+) False G105091
TU118347 lncRNA downstream 17681 1721995 ~ 1722691 (+) True G105091
TU118368 lncRNA downstream 52067 1756381 ~ 1757197 (+) True G105107
TU118374 lncRNA downstream 62495 1766809 ~ 1771032 (+) True G105111
XM_036935053.1 mRNA upstream 4586 1683561 ~ 1698369 (+) True gpd1l
XR_005034589.1 mRNA upstream 96182 1605339 ~ 1606773 (+) False LOC118937325
XM_021594953.2 mRNA downstream 575 1704889 ~ 1707675 (+) False tmem42a
XR_005034588.1 mRNA downstream 575 1704889 ~ 1707675 (+) True tmem42a
XM_036935139.1 mRNA downstream 40984 1745298 ~ 1794938 (+) False LOC110514512
XM_036935148.1 mRNA downstream 40984 1745298 ~ 1794938 (+) True LOC110514512
XM_036935153.1 mRNA downstream 112494 1816808 ~ 1853570 (+) True slc6a3
TU118276 other upstream 2524 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 350092 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 549206 1153061 ~ 1153749 (+) True G104761
TU116938 other upstream 830440 860506 ~ 872515 (+) False cmc1
TU118283 other downstream 4655 1708969 ~ 1710557 (+) True G105042
TU119728 other downstream 816402 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 1013647 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 1270509 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 1502483 3206797 ~ 3391033 (+) True G106253

Expression Profile