RNA id: TU118347


Basic Information

Item Value
RNA id TU118347
length 543
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G105091
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1721995 ~ 1722691 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTAGTTACACAAACTCTAAGTCATTTTCAGGGCATTTGACAACTTAAAAACATCTTAATTCCTAACTTTCCAATAGGTAGTGTGTGTTGGCTACTGGTCTGTGTTATTGCAGCAGGCTGAAGGTGTCTAACAGTGTGGAACGTTCTAGTATGTGAAGTATAGACTGGTACGTACTGTGAAGAGCACAAAGAACTTCTGGTTGTTCTCTCCCACACAGTTGTTAACCCAGGGACAGTGGTGGTCCATCTTCCTTATGCAGCGCTTACACACActagtatggagagagagaactaatTATACACACTAGACAGTGTCAGTCAGGGTTACTCTACCTGCAGTGTTGTCTGTTCTCTGGGACAGTGTCAATCAGGGTTATTCTACCTGTAGTGTTCTCTGGGACAGTGTCAGTCAGGGTTACTCTACCTGCAGTGTTGTCTGTTCTCTGGGACAGTGTCAGTCAGGGTTACTCTACCTGCAGTGTTCTCTGGGACAGTGTCAGTCAGGGTTACTCTACCTGCAGTGTTAACTGGGACAGTGTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118261 lncRNA upstream 17149 1702955 ~ 1704846 (+) True G105030
TU118259 lncRNA upstream 17681 1702955 ~ 1704314 (+) False G105030
TU118260 lncRNA upstream 17681 1702955 ~ 1704314 (+) False G105030
TU118336 lncRNA upstream 25570 1695943 ~ 1696425 (+) True G105083
TU118330 lncRNA upstream 42508 1679058 ~ 1679487 (+) True G105078
TU118368 lncRNA downstream 33690 1756381 ~ 1757197 (+) True G105107
TU118374 lncRNA downstream 44118 1766809 ~ 1771032 (+) True G105111
TU118284 lncRNA downstream 75807 1798498 ~ 1799324 (+) True G105043
TU118280 lncRNA downstream 76982 1799673 ~ 1799993 (+) True G105039
TU118282 lncRNA downstream 83005 1805696 ~ 1806063 (+) True G105041
XM_021594953.2 mRNA upstream 14320 1704889 ~ 1707675 (+) False tmem42a
XR_005034588.1 mRNA upstream 14320 1704889 ~ 1707675 (+) True tmem42a
XM_036935053.1 mRNA upstream 23626 1683561 ~ 1698369 (+) True gpd1l
XR_005034591.1 mRNA upstream 115222 1605339 ~ 1606773 (+) False LOC118937325
XM_036935139.1 mRNA downstream 22607 1745298 ~ 1794938 (+) False LOC110514512
XM_036935148.1 mRNA downstream 22607 1745298 ~ 1794938 (+) True LOC110514512
XM_036935153.1 mRNA downstream 94117 1816808 ~ 1853570 (+) True slc6a3
XM_036935163.1 mRNA downstream 142674 1865365 ~ 1901448 (+) False LOC110511503
XM_036935165.1 mRNA downstream 142674 1865365 ~ 1901448 (+) False LOC110511503
TU118283 other upstream 11438 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 21564 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 369132 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 568246 1153061 ~ 1153749 (+) True G104761
TU116939 other upstream 849480 860506 ~ 872515 (+) True cmc1
TU119728 other downstream 798025 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 995270 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 1252132 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 1484106 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 1644514 3367205 ~ 3425955 (+) False mboat1

Expression Profile