RNA id: TU118787


Basic Information

Item Value
RNA id TU118787
length 3915
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G105360
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1801317 ~ 1805294 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTGTCCAATAGACCTCTATAGTAACAAACACCTGTCCAATAGACCTCTATAGTAACAAACACCTGTCCAATAGACCTCTATAGTAACATTCAGGTGATTAACAGTGGATAGATCGACAGGCTaggtcccagatggcaccctattccctatatagtgcactactttagaccagagccctattccctatatagtgcactactttagaccagagccctattccctatatagagcactactatagaccagggccctattccctatatagtgcactactttagaccagggccctattccctacatagagcactacattagaccagagccctattccctatatagagcactacattagaccagagccctattccctatatagagcactacattagaccagagccctaatccctatatagagcactactttagaccagggccctattccctatatagagcactactttagaccagagccctattccctatatagagcactacattagaccagggccctattccctatatagagcactacattagaccagagctctactccctatatagagcactacattagaccagagccctattccctatatagagcactactttagaccagggccctattccctatatagagcactacattagaccagagccctattccctatatagagcactactatagaccagggccctattccctatatagtgcactactttagaccagggccctattccctacatagagcactacattagaccagagccctattccctatatagagcactacattagaccagagccctattccctatatagagcactacattagaccagagccctaatccctatatagagcactactttagaccagggccctattccctatatagagcactactttagaccagagccctattccctatatagagcactacattagaccagggccctattccctatatagagcactacattagaccagagctctactccctatatagagcactacattagaccagagccctattccctatatagagcactactttagaccagggccctattccctatatagagcactacattagaccagagccctattccctatatagagcactacattagaccagagccctatggacacAGATTCATGTAACTAACGCAGAACGCATTACAATGACTCCATCTGTCGGGAGACAACGTATTAACCAAGGAGAAATACAGTCTTCCTTGGTCTTTCCATCCAGCAGACATTTCTACCAGCAAGTCTAGTCTACCGACAGTAATATTTACCCTCAACAAAAAAAGATTGTCCAATTGTCCACAACTGATTGAAAAGAGCAACACATTTCAGAGAAAGTTAAGAATTAAAAACAGCTTTTGAAATAAAAATCCACGACTCAGTGAGTTAAAACACCTACGATAAGTGATTATATTAATCCACAGGGCAAAATTAGGCATTCAAAGTGTTAGGAATTTCTCATTTCTTAAATAACTATTTAAAACTCTTCATGAGACGGTCTTAATGGAGCGGTTTGATGTGGTGCCATAACAGTAGAACAACCACAGAAGAGAAAACCATCAGAAGTCACCCGGTGTGTTTCAGGAAGTTGATAATACGTGGAGcgcattaaaaataaataaacatttaaataatGAGAGTATTTATAATTTCTACACAGAATTACGTGTGAGTGGTGTACCTCCCAACGGAGAAAtaaacagaccccccccccccaccagctaGTTGGACCTTTACTAGTTGTTGATAGTGCATTAATCACAAtcacatcacaatatcccataatgacatcacaatatcccataatgacatcacaataccccataatgacatcacaataccccataatgacgaggagaaaacaggtttttagaaatgtttgctaatttattagaAATAAAAACCAGAAAaacccttatttacataattattcagaccctttgctatgagagactcaaaattgagctcaggtgcgcgTGTGcgtcaattgatcatccttgagatgtttctacaacttgagtccacctgtggtaaattcaatggattggacattatttggaaaggcacagaggtcccacagttgacagtgcatgtcagagcaaaaaccaagcaaagAGGTCggaggaattgtctgtagagctccgagacaggattgtgtcgaggcacagatctggggaagggtaccaaaacatttccgcagcattgaaggttcccaagaacacagtggcctccttcattcttaaatggaagaagtttggaaccaccaagactcttcctagagctggccgcccggccaaactgagcaatcggaggataagggccttggtcagggaggtgaccaagaacccgatggtcactctgaaagagctccagagttcttctgtggagagggaagaaccttccagaaggacaaccatctctgcagcactccatcaatcaggcctttatggtaaagaggccagacggaagccactcctcagtaaaaggtacatgacagcccgcttggagtttgccaaaaggccccaaaaggactcgcagaccatgagaaaccatgagaaacaaaattatctggtctgatgaaaccaagattgaactctttggcctgaatgactattatcacgtctggaggaaacctggcaccatccctacggtgaagcatggtgccggcagcatcaagctgtggggatgtttttcagcggcaggactgggagactagtcaggatcaaggcaaagatgaacagagcaaagtacagagaaatccttgatgaaaacctgctccagagcgctcaggacctcagactggggcgaaggttcaccttccaacaggacaatgaccccaagacagcgtaggagtggcttcgggacaagtctctgaatgtccttgagtggcccagccagagcctggacctgaacctgatcgaacatctctggagagacctgaaaatagctgtgcagtgacgctccccatccaacctgatggagcttgagaggatctgcagagaggaatgggagaaactccccaaatacaggtgtgccaagcttgtagtgtcataaccaagaagaccggaggctgtaatcgctgccaaatgtgcttcaacaaagtactgagtaaagggtctgaatacttatgtaaatgtgatatttcagtttaatttatatatataaatttgcaaacatttctaaaaacctgtttttgctttgtcattatgaggtattgtgatgtcattatggtgtattgtgatgtcattatgaggtattgtgatgtcattatgaggtattgtgatgtcattatggtgtattgtgtgtagattgatgaggggggaaaaaactatttaatcaattttggaataaggctgaaacttaccaaaatgtgtaaaaagtcaaggggtctgaatactttcagaaggcgcTGTACATGAGATAAAATAAGGAGACATAACTGACCGCAGTGATGCTGAAAGTCCTATTTAATCTATCTACCCAACCCCAGGAGATAAAATAAGGAGACATAACTGACCTCAGTGATGCTGAAAGTCCTATTTAATCTATCTACCCAACCCCAGGAGATAAAATAAGGAGACATAACTGACCGCAGTGATGCTGAAAGTCCTATTTAATCTATCTACCCAACCCCAGGAGATAAAATAAGGAGACATACCTGACCTCAGTGATGCTGAAAGTCCTATTTAATCTATCTACCCAACCCCAGGAGATAAAATAAGGAGACATAACTGACCTCAGTGATGCTGAAAGTCATATTTAATCTATCTACCCAACCCCAGGAGATAAAATAAGGAGACATAACTGACCTCAGTGATGCTGAAAGTCCTATTTAATCTATCTACCCAACCCCAGGAGATAAAATAAGGAGACATAACTGACCTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118788 lncRNA downstream 1327 1799666 ~ 1799990 (-) True G105361
TU118854 lncRNA downstream 11592 1788390 ~ 1789725 (-) False G105418
TU118855 lncRNA downstream 11592 1788893 ~ 1789725 (-) True G105418
TU118845 lncRNA downstream 24330 1775935 ~ 1776987 (-) True G105409
TU118841 lncRNA downstream 37034 1762315 ~ 1764283 (-) False G105406
TU118791 lncRNA upstream 492 1805786 ~ 1806068 (-) True G105364
TU118792 lncRNA upstream 897 1806191 ~ 1806427 (-) True G105365
TU118862 lncRNA upstream 7640 1812934 ~ 1813224 (-) True G105423
TU118867 lncRNA upstream 11576 1816870 ~ 1817124 (-) False G105425
TU118868 lncRNA upstream 11576 1816870 ~ 1817281 (-) True G105425
XM_036935117.1 mRNA downstream 68984 1709516 ~ 1732333 (-) False zdhhc3a
XM_036935127.1 mRNA downstream 68984 1709516 ~ 1732333 (-) False zdhhc3a
XM_036935130.1 mRNA downstream 68984 1709516 ~ 1732333 (-) False zdhhc3a
XM_036935112.1 mRNA downstream 69329 1709516 ~ 1731988 (-) False zdhhc3a
XM_036935133.1 mRNA downstream 69329 1713954 ~ 1731988 (-) True zdhhc3a
XM_036935194.1 mRNA upstream 115716 1921010 ~ 1925939 (-) True nrsn1
XM_036935207.1 mRNA upstream 497342 2302636 ~ 2303881 (-) True LOC118937333
XR_005034602.1 mRNA upstream 624981 2430275 ~ 2440302 (-) False LOC118937335
XR_005034601.1 mRNA upstream 626471 2431765 ~ 2440302 (-) False LOC118937335
XM_021593876.2 mRNA upstream 641080 2446374 ~ 2449761 (-) True sox4b
TU118763 other downstream 159585 1641267 ~ 1641732 (-) True G105340
TU118629 other downstream 182281 1593781 ~ 1619036 (-) False LOC110515405
TU118668 other downstream 259611 1540730 ~ 1541706 (-) True G105285
TU118550 other downstream 458982 1333986 ~ 1342335 (-) False G105220
TU118889 other upstream 107298 1912592 ~ 1916995 (-) False G105427
TU118905 other upstream 107298 1912592 ~ 1916995 (-) False G105427
TU118893 other upstream 107378 1912672 ~ 1916995 (-) False G105427
TU118896 other upstream 107378 1912672 ~ 1916995 (-) False G105427
TU118901 other upstream 107378 1912672 ~ 1916995 (-) False G105427

Expression Profile