RNA id: TU118868


Basic Information

Item Value
RNA id TU118868
length 412
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G105425
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1816870 ~ 1817281 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacaaaaaaaacatgatttgatGTAAATTACTTTGTTGAAATATGAGAATATATTGACAAATTCATACAAAATGAATTAAAAACATAATTAAAAAACTGTTAACAAAAAAAAACTCACCTTTATAGATGACGAGGAAATAAAACCTTGTGGtctttttttcccaaaaatgtaTCTTCAACCCGTTTTAATTCCTACTGCGTTGTTGCTCTTCCTCCATCCAGACTCTGTTACTGATGAACATCATGGAAGACCTCGGATGGTTGGAACTCAGACCTGGAACCGAAGAAGGCaaatggggagacagagagaggaatagagaaggagaaagaaagagagagatgtctgGGGGTTCGGAGGTGTGTGGACCTCTGGGTTGGGGACTAGACTGCTCTGTAAGGGTCCGTTTCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118862 lncRNA downstream 3646 1812934 ~ 1813224 (-) True G105423
TU118792 lncRNA downstream 10443 1806191 ~ 1806427 (-) True G105365
TU118791 lncRNA downstream 10802 1805786 ~ 1806068 (-) True G105364
TU118787 lncRNA downstream 11576 1801317 ~ 1805294 (-) True G105360
TU118788 lncRNA downstream 16880 1799666 ~ 1799990 (-) True G105361
TU118917 lncRNA upstream 844 1818125 ~ 1818345 (-) True G105431
TU118918 lncRNA upstream 2165 1819446 ~ 1819675 (-) True G105432
TU118919 lncRNA upstream 4194 1821475 ~ 1822139 (-) True G105433
TU118929 lncRNA upstream 33337 1850618 ~ 1853497 (-) True G105442
TU118931 lncRNA upstream 42470 1859751 ~ 1859955 (-) True G105444
XM_036935117.1 mRNA downstream 84537 1709516 ~ 1732333 (-) False zdhhc3a
XM_036935127.1 mRNA downstream 84537 1709516 ~ 1732333 (-) False zdhhc3a
XM_036935130.1 mRNA downstream 84537 1709516 ~ 1732333 (-) False zdhhc3a
XM_036935112.1 mRNA downstream 84882 1709516 ~ 1731988 (-) False zdhhc3a
XM_036935133.1 mRNA downstream 84882 1713954 ~ 1731988 (-) True zdhhc3a
XM_036935194.1 mRNA upstream 103729 1921010 ~ 1925939 (-) True nrsn1
XM_036935207.1 mRNA upstream 485355 2302636 ~ 2303881 (-) True LOC118937333
XR_005034602.1 mRNA upstream 612994 2430275 ~ 2440302 (-) False LOC118937335
XR_005034601.1 mRNA upstream 614484 2431765 ~ 2440302 (-) False LOC118937335
XM_021593876.2 mRNA upstream 629093 2446374 ~ 2449761 (-) True sox4b
TU118763 other downstream 175138 1641267 ~ 1641732 (-) True G105340
TU118629 other downstream 197834 1593781 ~ 1619036 (-) False LOC110515405
TU118668 other downstream 275164 1540730 ~ 1541706 (-) True G105285
TU118550 other downstream 474535 1333986 ~ 1342335 (-) False G105220
TU118889 other upstream 95311 1912592 ~ 1916995 (-) False G105427
TU118905 other upstream 95311 1912592 ~ 1916995 (-) False G105427
TU118893 other upstream 95391 1912672 ~ 1916995 (-) False G105427
TU118896 other upstream 95391 1912672 ~ 1916995 (-) False G105427
TU118901 other upstream 95391 1912672 ~ 1916995 (-) False G105427

Expression Profile