RNA id: TU118929


Basic Information

Item Value
RNA id TU118929
length 985
lncRNA type antisense_over
GC content 0.40
exon number 4
gene id G105442
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1850618 ~ 1853497 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtacatttgaaaacattttcaGAAGAGAAGTAACAGACAACACATTTTTGAAGTGTCAAAAGGAAACTGTTGGCACAATATAAAAAGCTAGTTTACTATGTAACGGGTATATGTTGTCACAAACTTAACTTAAAACATGTACACTTTCATATACAGTTAAATACAGTCATGTCCTTTTGTTATTGGCTATGTTGTTTCTGTAATAAATACTATTTCTCTTAGTTACCTCTACAACAGATAATCATATAATATATTTTACACTAAACCAAATGCTCAGATTTTTCCTCAGCTCACAAATTAAACATGAATATATAGGTGTATTATCCATAATCATAACAGTCATTGTTTAAGATTGATATTTTGACCGAACATCACCAACATCCTGATCTAGATCACAGCACACAACCACACGTCCATTGAGGAAATTAAAGACCACTACGATTTGACAGCTTGGTTGGCATTTCAaacacttctctctcctcttgttaCGGGATAAACTCTCTTCGCATGTCTGCCGTGCCTCCTTCTAGCCATCCatccctcactctatccctccatccatccctcactctatccatccctccatcactcactctatccatccctccctcgctctctctatccatccatcctccatgTGAACGGACCTCTGTCTTCTTCCTGGGCTCAGATCACCATCCAGTGTTGGAGCTGTGGAAAGGACAATAAATACACTAAGGTagagtaaggtaaggtaaggtagagTAAGGTAAGGTAGAGTAagataaggtaaggtagaGTAAGGTAAGGTAGAGTAAGAtaaggtaaggtagggtaaggtaaggtagagtaaggtaaggtaaggtagggtaaggtaaggtaaggtaaggtagggtagggtaaggtaaggtagggtaaggtaaggtagggtaagatggggtaaggtagggtaaggtaaggtaagaagGGGAGGTTAAGTAACGTCATGTAAACAGTGAAGAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118919 lncRNA downstream 28479 1821475 ~ 1822139 (-) True G105433
TU118918 lncRNA downstream 30943 1819446 ~ 1819675 (-) True G105432
TU118917 lncRNA downstream 32273 1818125 ~ 1818345 (-) True G105431
TU118868 lncRNA downstream 33337 1816870 ~ 1817281 (-) True G105425
TU118867 lncRNA downstream 33494 1816870 ~ 1817124 (-) False G105425
TU118931 lncRNA upstream 6254 1859751 ~ 1859955 (-) True G105444
TU118934 lncRNA upstream 7733 1861230 ~ 1861847 (-) True G105446
TU118939 lncRNA upstream 10824 1864321 ~ 1864786 (-) True G105447
TU118952 lncRNA upstream 22582 1876079 ~ 1877187 (-) True G105455
TU118954 lncRNA upstream 26086 1879583 ~ 1880284 (-) True G105456
XM_036935117.1 mRNA downstream 118285 1709516 ~ 1732333 (-) False zdhhc3a
XM_036935127.1 mRNA downstream 118285 1709516 ~ 1732333 (-) False zdhhc3a
XM_036935130.1 mRNA downstream 118285 1709516 ~ 1732333 (-) False zdhhc3a
XM_036935112.1 mRNA downstream 118630 1709516 ~ 1731988 (-) False zdhhc3a
XM_036935133.1 mRNA downstream 118630 1713954 ~ 1731988 (-) True zdhhc3a
XM_036935194.1 mRNA upstream 67513 1921010 ~ 1925939 (-) True nrsn1
XM_036935207.1 mRNA upstream 449139 2302636 ~ 2303881 (-) True LOC118937333
XR_005034602.1 mRNA upstream 576778 2430275 ~ 2440302 (-) False LOC118937335
XR_005034601.1 mRNA upstream 578268 2431765 ~ 2440302 (-) False LOC118937335
XM_021593876.2 mRNA upstream 592877 2446374 ~ 2449761 (-) True sox4b
TU118763 other downstream 208886 1641267 ~ 1641732 (-) True G105340
TU118629 other downstream 231582 1593781 ~ 1619036 (-) False LOC110515405
TU118668 other downstream 308912 1540730 ~ 1541706 (-) True G105285
TU118550 other downstream 508283 1333986 ~ 1342335 (-) False G105220
TU118889 other upstream 59095 1912592 ~ 1916995 (-) False G105427
TU118905 other upstream 59095 1912592 ~ 1916995 (-) False G105427
TU118893 other upstream 59175 1912672 ~ 1916995 (-) False G105427
TU118896 other upstream 59175 1912672 ~ 1916995 (-) False G105427
TU118901 other upstream 59175 1912672 ~ 1916995 (-) False G105427

Expression Profile