RNA id: TU118389


Basic Information

Item Value
RNA id TU118389
length 214
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G105122
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1854017 ~ 1854230 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTTGATGCTATGGGACTAaattgcttccactggtcctgggatcCTTCGTTAAGGTCAACAGTATCATGATCTCTACCCAGAACCAAGACATTTTATCCAAAAACCCTCGTTGTCTCTGttaggaggctgaaacttggtcACAAGTAGATCTTCcggcaagacaataaccccaagcacacatcaaaatccacaaagaaatgattcattggcca

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118422 lncRNA upstream 18901 1834614 ~ 1835116 (+) True G105130
TU118381 lncRNA upstream 42209 1811581 ~ 1811808 (+) True G105116
TU118380 lncRNA upstream 43712 1810076 ~ 1810305 (+) True G105115
TU118268 lncRNA upstream 46350 1806903 ~ 1807667 (+) False G105033
TU118386 lncRNA downstream 79 1854309 ~ 1854718 (+) True G105119
TU118388 lncRNA downstream 930 1855160 ~ 1855480 (+) True G105121
TU118387 lncRNA downstream 1354 1855584 ~ 1857117 (+) True G105120
TU118430 lncRNA downstream 7006 1861236 ~ 1861734 (+) False G105136
TU118431 lncRNA downstream 7006 1861236 ~ 1861734 (+) False G105136
XM_036935153.1 mRNA upstream 447 1816808 ~ 1853570 (+) True slc6a3
XM_036935139.1 mRNA upstream 59079 1745298 ~ 1794938 (+) False LOC110514512
XM_036935148.1 mRNA upstream 59079 1745298 ~ 1794938 (+) True LOC110514512
XM_021594953.2 mRNA upstream 146342 1704889 ~ 1707675 (+) False tmem42a
XR_005034588.1 mRNA upstream 146342 1704889 ~ 1707675 (+) True tmem42a
XM_036935163.1 mRNA downstream 11135 1865365 ~ 1901448 (+) False LOC110511503
XM_036935165.1 mRNA downstream 11135 1865365 ~ 1901448 (+) False LOC110511503
XM_036935173.1 mRNA downstream 11135 1865365 ~ 1901448 (+) False LOC110511503
XM_036935178.1 mRNA downstream 11135 1865365 ~ 1901448 (+) False LOC110511503
XM_036935186.1 mRNA downstream 11135 1865365 ~ 1901448 (+) False LOC110511503
TU118283 other upstream 143460 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 153586 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 501154 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 700268 1153061 ~ 1153749 (+) True G104761
TU116939 other upstream 981502 860506 ~ 872515 (+) True cmc1
TU119728 other downstream 666486 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 863731 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 1120593 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 1352567 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 1512975 3367205 ~ 3425955 (+) False mboat1

Expression Profile