RNA id: TU118387


Basic Information

Item Value
RNA id TU118387
length 1432
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G105120
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1855584 ~ 1857117 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CcctgaatagggaatagggtgcatacAACATTATAGTTTTAGTGCAATACTGTAGTGCACTAGAATCCAAGTAAACCAAAGACAATTGAAGTGGACACAGAGCTATATATAACGAGGGGGGTTTATATAGTTCTGTTTCTCTATATTCTCTGTACGGGTAACTTGTACAAggtgtgaaatatatatattgtttttgcaTATCTCATTCCCCTGAGAGTGAGCAGAACAAAATATTTTCACCTTGTCGTCTCGGGGGATTCGATCCGGAAAATCTTTCAATTGCCCAAACGCTCCTAatccaccaggctacctgcctgaTCTATGGTTCCCCTGTTACAGAGATAATATACAGTTAATGAAGATGTCTTATTGACTGGCACAACGCCTCTATTTGGCCTAGATcatctgtgtgtttgtattgatttGTGTGTGCCTTTTTTCAAATGtttgtagttctgtccttgatctgttcttgtctattaatgttctttattatgtcatgttctgtgtggactggcccaggaagagtagctgctgctttagcagtaactaatggagatcctaataaaacacCAAGATGTGTTGGGTAACATGGCCATAGCTCTCCATCGTATGTCTCTTAAACAAGCTATTTGGAAACAGAAACAGCTAACAGCCAATTATCTGAATGTCTCTACAAAGGACATCAGGTTTAATTGTTAACAGGAAAGTGTTAAAATATTCAATACTGTTTAAAAAcagcttttattttattttaaatgacaTATGTACTGTGATCTATTACGTGTATTCTGTATACTCTATTTGTGTAATTTAAATGTATCTTTTAGAGGGGCTTCTATTGTCTTGAGATGGTATCAAATGTAACTTTTAGAGGGGCTTGTATTGTCTTGAGATGGTATCAAATGTAACATTTAGAGGGGCTTGTATTGTCTTGAGATGGTATCAAATGTAACCAATAGAGGGGCTTGTATTGTCTTGAGATGGTATCAAATGTAACCAATAGAGGGGCTTCTATTGTCTTGAGATGGTATTAAATGTATATTTTAGAGGGGCTTCTATTGTCTTGAGATGGTATTAAATGTAACCAATAGAGGGGCTTGTATTGTCTTGAGATGGTATCAAATGTAACCAATAGAGGGGCTTGTATTGTCTTGAGATGGTATCAAATGTAACCAATAGAGGGGCTTCTATTGTCTTGAGATGGTATTAAATGTATATTTTAGAGGGGCTTCTATTGTCTTGAGATGGTATCAAATgtaaccaaccctaaccctaACTCTAGACCTTATCTGACAGTCAAACTGTCAATACACTGTTCTGCTTCCCTTCAACAACAACTCTTCAGGCAAACACGGGCTGCAGACAATTCTGTTTGATCTGTACAAAATGGCTACCTGAAATAGGTTTTCTCTTTAAGACGAAGATAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118388 lncRNA upstream 104 1855160 ~ 1855480 (+) True G105121
TU118386 lncRNA upstream 866 1854309 ~ 1854718 (+) True G105119
TU118389 lncRNA upstream 1354 1854017 ~ 1854230 (+) True G105122
TU118422 lncRNA upstream 20468 1834614 ~ 1835116 (+) True G105130
TU118381 lncRNA upstream 43776 1811581 ~ 1811808 (+) True G105116
TU118430 lncRNA downstream 4119 1861236 ~ 1861734 (+) False G105136
TU118431 lncRNA downstream 4119 1861236 ~ 1861734 (+) False G105136
TU118432 lncRNA downstream 4119 1861236 ~ 1861734 (+) False G105136
TU118434 lncRNA downstream 4119 1861236 ~ 1861734 (+) True G105136
TU118453 lncRNA downstream 27718 1884835 ~ 1885274 (+) True G105148
XM_036935153.1 mRNA upstream 2014 1816808 ~ 1853570 (+) True slc6a3
XM_036935139.1 mRNA upstream 60646 1745298 ~ 1794938 (+) False LOC110514512
XM_036935148.1 mRNA upstream 60646 1745298 ~ 1794938 (+) True LOC110514512
XM_021594953.2 mRNA upstream 147909 1704889 ~ 1707675 (+) False tmem42a
XM_036935163.1 mRNA downstream 8248 1865365 ~ 1901448 (+) False LOC110511503
XM_036935165.1 mRNA downstream 8248 1865365 ~ 1901448 (+) False LOC110511503
XM_036935173.1 mRNA downstream 8248 1865365 ~ 1901448 (+) False LOC110511503
XM_036935178.1 mRNA downstream 8248 1865365 ~ 1901448 (+) False LOC110511503
XM_036935186.1 mRNA downstream 8248 1865365 ~ 1901448 (+) False LOC110511503
TU118283 other upstream 145027 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 155153 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 502721 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 701835 1153061 ~ 1153749 (+) True G104761
TU116939 other upstream 983069 860506 ~ 872515 (+) True cmc1
TU119728 other downstream 663599 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 860844 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 1117706 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 1349680 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 1510088 3367205 ~ 3425955 (+) False mboat1

Expression Profile