RNA id: TU118453


Basic Information

Item Value
RNA id TU118453
length 235
lncRNA type intronic
GC content 0.37
exon number 2
gene id G105148
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1884835 ~ 1885274 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctctctctctctctgtctctgtctctgtctctctgtctctctcactttgtctAAGTGTCTGTGGGTATCTGACTGTAACTGAGTGTTTGTCTCGGTGGGTCTGTATCTGACTGTAACTAAGTGTGTGTTGTCTAGGTGTGTTGTCTAGGTGGGTCTGTATCTGACTGTAACTAAGTGTGTGTTGTCTAGGTGGGTCTGTATCTGACTATCTGACTGCACctaagtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118430 lncRNA upstream 23101 1861236 ~ 1861734 (+) False G105136
TU118431 lncRNA upstream 23101 1861236 ~ 1861734 (+) False G105136
TU118432 lncRNA upstream 23101 1861236 ~ 1861734 (+) False G105136
TU118434 lncRNA upstream 23101 1861236 ~ 1861734 (+) True G105136
TU118387 lncRNA upstream 27718 1855584 ~ 1857117 (+) True G105120
TU118457 lncRNA downstream 4649 1889923 ~ 1890287 (+) True G105151
TU118458 lncRNA downstream 6192 1891466 ~ 1891948 (+) True G105152
TU118464 lncRNA downstream 15424 1900698 ~ 1901456 (+) True LOC110511503
TU118466 lncRNA downstream 17038 1902312 ~ 1903179 (+) True G105158
TU118467 lncRNA downstream 18157 1903431 ~ 1903890 (+) True G105159
XM_036935153.1 mRNA upstream 31265 1816808 ~ 1853570 (+) True slc6a3
XM_036935139.1 mRNA upstream 89897 1745298 ~ 1794938 (+) False LOC110514512
XM_036935148.1 mRNA upstream 89897 1745298 ~ 1794938 (+) True LOC110514512
XM_021594953.2 mRNA upstream 177160 1704889 ~ 1707675 (+) False tmem42a
XM_036935200.1 mRNA downstream 231279 2116553 ~ 2120455 (+) True LOC110516539
XM_036961504.1 mRNA downstream 280847 2166121 ~ 2177996 (+) True LOC118944029
XM_036961507.1 mRNA downstream 532912 2418186 ~ 2420621 (+) True LOC118944030
XR_005034608.1 mRNA downstream 1092962 2978236 ~ 2978524 (+) True LOC118937340
XR_005034604.1 mRNA downstream 1093512 2978786 ~ 2980193 (+) False LOC118937337
TU118283 other upstream 174278 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 184404 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 531972 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 731086 1153061 ~ 1153749 (+) True G104761
TU116939 other upstream 1012320 860506 ~ 872515 (+) True cmc1
TU119728 other downstream 635442 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 832687 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 1089549 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 1321523 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 1481931 3367205 ~ 3425955 (+) False mboat1

Expression Profile