RNA id: TU118458


Basic Information

Item Value
RNA id TU118458
length 331
lncRNA type intronic
GC content 0.43
exon number 3
gene id G105152
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1891466 ~ 1891948 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGTGCTGGTGCTACCATGTGCTGGAGCTACCATGTTCTGGAGCCCTGATTTTAAGATTTTAAGGAAAACcaggtgtttacatgtcctaacaATTGGAAAggttgctcagaaaaccaggtgtttacATCCTAACAATTGAAAAGGtggctcagaaaaccaggtgtttacATCCTAACAATTGGAAAggttgctcagaaaaccaggtgttttaaacAGTGTATGTTTACTTCTGATTTTGACCTGACACCGATTTAAGATAAGCGGAGGAAGGAGTTTAAAAAAGCTTGACAATTGTcccggcgtcgtccgggttaagggagggtttgggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118457 lncRNA upstream 1179 1889923 ~ 1890287 (+) True G105151
TU118453 lncRNA upstream 6192 1884835 ~ 1885274 (+) True G105148
TU118430 lncRNA upstream 29732 1861236 ~ 1861734 (+) False G105136
TU118464 lncRNA downstream 8750 1900698 ~ 1901456 (+) True LOC110511503
TU118466 lncRNA downstream 10364 1902312 ~ 1903179 (+) True G105158
TU118467 lncRNA downstream 11483 1903431 ~ 1903890 (+) True G105159
TU118470 lncRNA downstream 14548 1906496 ~ 1906960 (+) True G105162
TU118397 lncRNA downstream 20516 1912464 ~ 1917016 (+) False G105123
XM_036935153.1 mRNA upstream 37896 1816808 ~ 1853570 (+) True slc6a3
XM_036935139.1 mRNA upstream 96528 1745298 ~ 1794938 (+) False LOC110514512
XM_036935148.1 mRNA upstream 96528 1745298 ~ 1794938 (+) True LOC110514512
XM_021594953.2 mRNA upstream 183791 1704889 ~ 1707675 (+) False tmem42a
XM_036935200.1 mRNA downstream 224605 2116553 ~ 2120455 (+) True LOC110516539
XM_036961504.1 mRNA downstream 274173 2166121 ~ 2177996 (+) True LOC118944029
XM_036961507.1 mRNA downstream 526238 2418186 ~ 2420621 (+) True LOC118944030
XR_005034608.1 mRNA downstream 1086288 2978236 ~ 2978524 (+) True LOC118937340
XR_005034604.1 mRNA downstream 1086838 2978786 ~ 2980193 (+) False LOC118937337
TU118283 other upstream 180909 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 191035 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 538603 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 737717 1153061 ~ 1153749 (+) True G104761
TU116939 other upstream 1018951 860506 ~ 872515 (+) True cmc1
TU119728 other downstream 628768 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 826013 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 1082875 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 1314849 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 1475257 3367205 ~ 3425955 (+) False mboat1

Expression Profile