RNA id: TU118971


Basic Information

Item Value
RNA id TU118971
length 460
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G105470
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1911627 ~ 1912086 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagaggcgcGAGGGATGGGGACAGAGGCTATAAACGGTGCTCCTAGAAATAGAACTCGAGGACGCTCACAGCGTTTGATGACTCACCAGGTCAATGGTTTCTCTAGGCTGTGTGTGACTCTCGCTGTCTCATTCCCAACCTATGCGACTGCAGATAGGACGGGGGAGAGGGGCTGCTGAAAGCTGTCTCTTACGGTAATCAATCCATGAGGAATCAAAAGCACATTTTAGACATTTTATTTTCAGATGTTGGGTCATGTAACTCATTACACAGACCTTCCATCCATACCATCATATAATAACtcatgtcgtgtctttggctatgccggattgagtgatatgacatgctattctatcaaataatttctctgtaattaatattacctgattgagctaatcatgtaaatgtcattaactagagagtcggggcaccacgaaagaatatttatagagctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118954 lncRNA downstream 31343 1879583 ~ 1880284 (-) True G105456
TU118952 lncRNA downstream 34440 1876079 ~ 1877187 (-) True G105455
TU118939 lncRNA downstream 46841 1864321 ~ 1864786 (-) True G105447
TU118934 lncRNA downstream 49780 1861230 ~ 1861847 (-) True G105446
TU118931 lncRNA downstream 51672 1859751 ~ 1859955 (-) True G105444
TU118886 lncRNA upstream 506 1912592 ~ 1916995 (-) False G105427
TU118903 lncRNA upstream 506 1912592 ~ 1916995 (-) False G105427
TU118907 lncRNA upstream 506 1912592 ~ 1916995 (-) False G105427
TU118894 lncRNA upstream 586 1912672 ~ 1917188 (-) False G105427
TU118898 lncRNA upstream 586 1912672 ~ 1917188 (-) False G105427
XM_036935117.1 mRNA downstream 179294 1709516 ~ 1732333 (-) False zdhhc3a
XM_036935127.1 mRNA downstream 179294 1709516 ~ 1732333 (-) False zdhhc3a
XM_036935130.1 mRNA downstream 179294 1709516 ~ 1732333 (-) False zdhhc3a
XM_036935112.1 mRNA downstream 179639 1709516 ~ 1731988 (-) False zdhhc3a
XM_036935133.1 mRNA downstream 179639 1713954 ~ 1731988 (-) True zdhhc3a
XM_036935194.1 mRNA upstream 8924 1921010 ~ 1925939 (-) True nrsn1
XM_036935207.1 mRNA upstream 390550 2302636 ~ 2303881 (-) True LOC118937333
XR_005034602.1 mRNA upstream 518189 2430275 ~ 2440302 (-) False LOC118937335
XR_005034601.1 mRNA upstream 519679 2431765 ~ 2440302 (-) False LOC118937335
XM_021593876.2 mRNA upstream 534288 2446374 ~ 2449761 (-) True sox4b
TU118763 other downstream 269895 1641267 ~ 1641732 (-) True G105340
TU118629 other downstream 292591 1593781 ~ 1619036 (-) False LOC110515405
TU118668 other downstream 369921 1540730 ~ 1541706 (-) True G105285
TU118550 other downstream 569292 1333986 ~ 1342335 (-) False G105220
TU118889 other upstream 506 1912592 ~ 1916995 (-) False G105427
TU118905 other upstream 506 1912592 ~ 1916995 (-) False G105427
TU118893 other upstream 586 1912672 ~ 1916995 (-) False G105427
TU118896 other upstream 586 1912672 ~ 1916995 (-) False G105427
TU118901 other upstream 586 1912672 ~ 1916995 (-) False G105427

Expression Profile